BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0274.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311595|ref|YP_003775687.1| two component response regulato...   114   5e-27
gi|300310564|ref|YP_003774656.1| regulator of the two-component ...    78   3e-16

>gi|300311595|ref|YP_003775687.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  114 bits (284), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 81/136 (59%)

Query: 14  KLRDAEKAAFGYTHLDLAAAMMQDWSIPRLFCEAVLHHKAPSQSGLDEESRHLRLAQMLH 73
           +LR  E+ +FG+ HL LAAAMMQDW  PR+FCEAVLHH+ P+ SGL+E+ R  ++ ++L 
Sbjct: 174 QLRVQERESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLE 233

Query: 74  VAGIIADYCVAPEGARVQALQALLDAGAPLNGEVDHVIALCDRVGRDWMEWSSMVNISAQ 133
           +AG +AD C A +  R   L  LL  G      V  +  +C RV  DW +W +++ +  +
Sbjct: 234 LAGCVADVCTASDAQRAALLPRLLQLGQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTR 293

Query: 134 ALPPTRDVLAQLREQS 149
            L      LA   EQ+
Sbjct: 294 VLREIGPELAAAAEQT 309


>gi|300310564|ref|YP_003774656.1| regulator of the two-component
           system protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 78.2 bits (191), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 63/116 (54%)

Query: 16  RDAEKAAFGYTHLDLAAAMMQDWSIPRLFCEAVLHHKAPSQSGLDEESRHLRLAQMLHVA 75
           R  E++ FG+ HL++AAA+MQDW IP LFC+AVLH++ P   G    +R   +   LH+A
Sbjct: 176 RAMEQSLFGFNHLNIAAALMQDWKIPDLFCDAVLHYETPVVIGEIAATRQDEIVWTLHLA 235

Query: 76  GIIADYCVAPEGARVQALQALLDAGAPLNGEVDHVIALCDRVGRDWMEWSSMVNIS 131
             +A+    P      AL     A A L      ++ L  + G+DW EW+  + I+
Sbjct: 236 QAMAELGCGPAQQAQAALARAGTALAQLQLAPHDLLVLYQQAGQDWQEWTQTMRIA 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 522,316
Number of extensions: 21813
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)