BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0271.p
         (439 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309385|ref|YP_003773477.1| acyl-CoA transferase [Herbaspir...   704   0.0  

>gi|300309385|ref|YP_003773477.1| acyl-CoA transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 500

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/438 (80%), Positives = 383/438 (87%), Gaps = 1/438 (0%)

Query: 1   MHSERI-PPTLAGKVMSAGDAARLFRTGMTIGMSGFTRAGDAKAIPRALAERGAEEALRF 59
           M S+RI  P LAGKVMSA +AA  F  GMTIG+SGFTRAGDAKA+PRALA+R A+E L F
Sbjct: 1   MDSQRIRQPALAGKVMSAAEAATFFHNGMTIGLSGFTRAGDAKAMPRALADRAAQEELHF 60

Query: 60  TVITGASLGNDSDGLMAEAGLLARRMPFQVDAALRRKINAGEVMFIDQHLSETAEQLRNG 119
           TVITGASLGN SDGLMAEAGLLARR+PFQVD  LRRKINAGEVMFIDQHLSETAEQLR+G
Sbjct: 61  TVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLRRKINAGEVMFIDQHLSETAEQLRSG 120

Query: 120 TLGPIDIAVVEAAAITSEGIIPTMSVGNSASFIEQARMIVIELNTSVPAALAGLHDIYLP 179
           T   IDIAV+EAAAIT EGI+PTMSVGNSASF+EQAR IVIELNTSVP AL GLHDIYLP
Sbjct: 121 TPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQARQIVIELNTSVPLALEGLHDIYLP 180

Query: 180 QGRPGRQPIPLTSPEQRIGTRAIPFDPARIAAIVVTDMPDSPSSVLPPDDETKAIAGHVI 239
             RP R+PIPLT  +QRIG+  IPFDPA++ AIV+T  PDSPSSVLPPDDET+AIAGHVI
Sbjct: 181 AARPAREPIPLTVADQRIGSTTIPFDPAKVVAIVLTQTPDSPSSVLPPDDETRAIAGHVI 240

Query: 240 RFLEGEVAAGRMGEELAPLQAGIGTIANAVLHGLTQSSFRNLTMFSEVLQDSAIELLDSG 299
            FLE EV AGR+   LAPLQAGIGTIANAVLHGL +S FRNL M+SEVLQDSAI+LLDSG
Sbjct: 241 HFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLVESPFRNLVMYSEVLQDSAIDLLDSG 300

Query: 300 QLRFASASSITLSSAMNDKFMRNLEYYRSRIVLRPQEISNHPELVRRLGIIALNTALEFD 359
           QL FASASSITLS      F+ N++ YR ++VLRPQEISNHPELVRRLGII LNTALEFD
Sbjct: 301 QLAFASASSITLSQDKYAHFLANIDRYRDKVVLRPQEISNHPELVRRLGIIGLNTALEFD 360

Query: 360 LYGNVNSTHVGGTHMMNGIGGSGDFARNGQLSIFVTKAAAKGGDISSVVPMVSHVDHTEH 419
           LYGNVNSTHVGGTHMMNGIGGSGDFARNGQ+SIFV+K+ AK G ISSVVPMVSHVDH+EH
Sbjct: 361 LYGNVNSTHVGGTHMMNGIGGSGDFARNGQISIFVSKSVAKDGAISSVVPMVSHVDHSEH 420

Query: 420 DVDVLVTEFGLADLRGLA 437
           DVDVLVTE+GLADLRGLA
Sbjct: 421 DVDVLVTEWGLADLRGLA 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,255,935
Number of extensions: 50086
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,203,190
Effective search space: 422319690
Effective search space used: 422319690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)