BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0269.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311809|ref|YP_003775901.1| two component response regulato...   217   3e-58
gi|300311884|ref|YP_003775976.1| two component response regulato...    65   3e-12
gi|300312677|ref|YP_003776769.1| two component hybrid sensor his...    56   1e-09

>gi|300311809|ref|YP_003775901.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  217 bits (553), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 125/144 (86%), Gaps = 2/144 (1%)

Query: 1   MADKDEVGILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFNGEGVPGREKF 60
           MA +  V I+LVEDDDGHA+LVEKNLRRAGL NGF+RL+DGQEALDY F+ +    R + 
Sbjct: 1   MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQR--SRTEL 58

Query: 61  ESLVVLLDVNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPREIERCYDYGCNLYITK 120
           + LVVLLDVNMPRV+GV+VL+RLK + V +AIP+IMLTTTDDPREI RCY+YGCN+YITK
Sbjct: 59  QQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITK 118

Query: 121 PVEYEAFIEAVRRLGFFLQIIKVP 144
           PVEYE FIEA+RRLGFFLQ++K+P
Sbjct: 119 PVEYEDFIEAIRRLGFFLQVVKLP 142


>gi|300311884|ref|YP_003775976.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 1/137 (0%)

Query: 3   DKDEVGILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFNGEGVPGREKFES 62
           D ++  I+LV+D    A L    L    L++      D + A ++FF GE    R     
Sbjct: 2   DIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGE-YAQRRDLHP 60

Query: 63  LVVLLDVNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPREIERCYDYGCNLYITKPV 122
            ++LLD+N+P +SG D LK +K N  T+ IP++M +++DD R+I + Y+ G N Y+ K  
Sbjct: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120

Query: 123 EYEAFIEAVRRLGFFLQ 139
           + + F+  V   G + +
Sbjct: 121 DPKEFMGTVVDTGIYWR 137


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 9   ILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFNGEGVPGREKFESLVVLLD 68
           IL++EDD   A+++    R  G           Q  + +  N EGV   E +    +L+D
Sbjct: 769 ILVIEDDAAFAMILRDLAREMGF----------QCVVTHSAN-EGVAAAEMYRPSAILMD 817

Query: 69  VNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPRE-IERCYDYGCNLYITKPVEYEAF 127
           +N+P  SG+ VL ++K N  T  IP+ +++  D   E +ER    G   Y  KPV+ E  
Sbjct: 818 MNLPDFSGLGVLDQIKRNPKTRHIPVHVVSVADYSHEAMER----GAIGYALKPVQREEL 873

Query: 128 IEAVRRL-GFFLQ 139
           I A+R+L   FLQ
Sbjct: 874 IGAIRKLEAKFLQ 886



 Score = 54.3 bits (129), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 9    ILLVEDDDGHALLVEKNLRRAGLSNGFLRLKDGQEALDYFFNGEGVPGREKFESLVVLLD 68
            IL+VEDD  +   +   L   G+     R  +G+EAL      +  P        +VL+D
Sbjct: 1037 ILVVEDDVRNIFALSSVLEPKGMKVEIAR--NGREALQALQRSQDKPDAP---IDLVLMD 1091

Query: 69   VNMPRVSGVDVLKRLKENEVTAAIPIIMLTTTDDPREIERCYDYGCNLYITKPVEYEAFI 128
            + MP + G+  ++ +++  V   +PII LT      + E+C   G N YI KP++ E  +
Sbjct: 1092 IMMPEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLL 1151

Query: 129  EAVR 132
              VR
Sbjct: 1152 SLVR 1155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.144    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 477,591
Number of extensions: 18890
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 5
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)