BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0266.p
         (501 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310445|ref|YP_003774537.1| phospholipase D family protein ...   680   0.0  
gi|300309580|ref|YP_003773672.1| phosphatidylserine/phosphatidyl...   134   1e-32

>gi|300310445|ref|YP_003774537.1| phospholipase D family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/441 (74%), Positives = 378/441 (85%), Gaps = 3/441 (0%)

Query: 64  PRIVPDMDTQSAKVIQIKGGRGILTPEQSKAVLDRFKDSNQDNLILEKHLAVEQAITGSP 123
           P IVPDMDTQSA+ IQ+KGGRG+L+  QSKAVL++ +  N DN +L++H+A+E AITGSP
Sbjct: 32  PTIVPDMDTQSARTIQMKGGRGVLSEAQSKAVLEKLRAQNADNTLLDRHVAIEGAITGSP 91

Query: 124 LVAGNKVTLLIDGPATYASMFAAIREARDHVNMETYIFEDDEAGKQFADLLIDRQKHGVQ 183
           LV GNKVTLLIDGPATYASM  AI+ AR H+NMETYI EDDE G+QFADLLI  Q  GVQ
Sbjct: 92  LVTGNKVTLLIDGPATYASMQQAIQAARYHINMETYIMEDDEVGRQFADLLIAMQNKGVQ 151

Query: 184 VNLMYDSVGTLSTPREFFQPMIDAGIQVLEFNPVNPAQARKGWEVNQRDHRKLLIVDGKT 243
           VNLMYDSVG L+TPR FFQPMIDAGIQVLE+NP+NP Q RK WEVNQRDHRKLL+VDGKT
Sbjct: 152 VNLMYDSVGALNTPRTFFQPMIDAGIQVLEYNPLNPTQLRKDWEVNQRDHRKLLVVDGKT 211

Query: 244 AFVGGINVSSVYSSGSF--RRSKPKDDDAG-KVPWRDTQVRMDGPVVAEFQKMFIDTWQK 300
           AFVGGIN+SSVYSSGSF  R+ KP+ +  G ++PWRDTQVR+DGPV  EFQK+F+DTW K
Sbjct: 212 AFVGGINISSVYSSGSFSTRKKKPRVNAEGEQIPWRDTQVRIDGPVALEFQKLFVDTWNK 271

Query: 301 QHGPKLAEKNYYPKVDNKGPEIVRGIGSAPEDPYSVIYATFISAIQHAESKVYLTNAYFI 360
           Q GP L +  Y+P V   G EIVR IGS+P+DPYSVIYATFISAIQHAE  +YLTNAYF+
Sbjct: 272 QRGPALGDHRYFPTVAPAGNEIVRAIGSSPDDPYSVIYATFISAIQHAEKAIYLTNAYFV 331

Query: 361 PDPQLRDALKDAVKRGVDVRLVLPSKSDSKLVLYASRSFYTELLEGGVKIYERQDALLHS 420
           PDPQLRD+LKDA +RGVDVRL+LPS SDS LVLYASRSFY ELLE G++IYERQDALLHS
Sbjct: 332 PDPQLRDSLKDAARRGVDVRLILPSHSDSSLVLYASRSFYQELLEAGIRIYERQDALLHS 391

Query: 421 KTAMIDGVWSTIGSTNLDWRSFIYNQEINAVILGRQFGAQMQSMFERDMNASREITLEAW 480
           KTA+IDGVWSTIGSTNLDWRSF+YNQEINAVIL  QFG QM+SMF+RD+ AS+EIT E W
Sbjct: 392 KTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPQFGVQMKSMFDRDLGASKEITKEQW 451

Query: 481 KDRPISDRMKEFGAGLWARWL 501
           + RPIS+RMKEFGA +WAR L
Sbjct: 452 EQRPISERMKEFGASVWARLL 472


>gi|300309580|ref|YP_003773672.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 170/381 (44%), Gaps = 29/381 (7%)

Query: 127 GNKVTLLIDGPATYASMFAAIREARDHVNMETYIFEDDEAGKQFADLLIDRQKHGVQVNL 186
           GN++ LL  G   Y ++ +AI  AR  + +ETYIF  D+ G    + L      GV V +
Sbjct: 9   GNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAAGRGVVVYV 68

Query: 187 MYDSVGT-LSTPREFFQPMIDAGIQVLEFNPVNPAQARKGWEVNQRDHRKLLIVDGKTAF 245
           + D +GT      +    +  AG+Q   FNP      R+G     R HRKL +VD + AF
Sbjct: 69  INDWLGTGRENTNKLHLALSAAGVQHRSFNP----WFRRG---VARSHRKLCVVDRQVAF 121

Query: 246 VGGINVSSVYSSGSFRRSKPKDDDAGKVP---WRDTQVRMDGPVVAEFQKMFIDTWQKQH 302
           VGG+N++    S          D    +P   W D  V + GP+V E  +     W +  
Sbjct: 122 VGGLNINDDMVS--------DRDHMTPLPAPRW-DFAVSILGPLVQEIYREVQAQWLRVG 172

Query: 303 GPKL-AEKNYYPKVDNKGPEIVRGIGSAP---EDPYS---VIYATFISAIQHAESKVYLT 355
             KL A    + ++ +     V     A     D +     I   ++ A+  A    +L 
Sbjct: 173 HMKLKARWRNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAFLA 232

Query: 356 NAYFIPDPQLRDALKDAVKRGVDVRLVLPSKSDSKLVLYASRSFYTELLEGGVKIYERQD 415
           N YF P  ++R AL++A  RGV V L+L       +    + SFY +LL  GV+I E   
Sbjct: 233 NPYFAPGRKMRRALEEAAMRGVKVTLLL-GVGQFMMQDAVAHSFYPKLLRAGVRIIEYTR 291

Query: 416 ALLHSKTAMIDGVWSTIGSTNLDWRSFIYNQEINAVILGRQFGAQMQSMFERDMNASREI 475
             LH+K A++D  W+T+GS+N D  S   NQE N V+    F   ++   E      R +
Sbjct: 292 TELHAKVAVVDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAGFLRQEIEAGATQGRVV 351

Query: 476 TLEAWKDRPISDRMKEFGAGL 496
            L  +   P   R   +GA  
Sbjct: 352 HLADFMHVPWYKR-AAYGAAF 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,536,409
Number of extensions: 61114
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 3
Length of query: 501
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,198,455
Effective search space: 493763460
Effective search space used: 493763460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)