BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0259.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase [Herb...   239   4e-65

>gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  239 bits (611), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/140 (81%), Positives = 124/140 (88%)

Query: 1   VMTKHPTFGTATGWHRDIRYWSFPRNELISVWLALGPEHADNGGLKFIPRSHLLQLQPDQ 60
           VMTKHP FGTATGWHRDIRYWSFPRNELISVWLALG E  +NG LKFIP SH L+LQP+Q
Sbjct: 115 VMTKHPAFGTATGWHRDIRYWSFPRNELISVWLALGAETPENGALKFIPGSHKLKLQPEQ 174

Query: 61  MDELDFLRPEVPANQALFAQGISVPLEKGDVVLFHSGLFHAAGRNSSDQVKASVVFAYHG 120
           MDELDFLRP+V ANQALFAQGI++ LE GDVVLFHSGLFHAAGRN SDQVK S VFAYHG
Sbjct: 175 MDELDFLRPDVAANQALFAQGIALSLEPGDVVLFHSGLFHAAGRNDSDQVKCSAVFAYHG 234

Query: 121 RSNAPIAGTRSAAAEDIALD 140
            SN P+AGTRSAA+ED+ L+
Sbjct: 235 ASNPPLAGTRSAASEDLPLE 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 480,045
Number of extensions: 19315
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)