BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0253.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313256|ref|YP_003777348.1| low-specificity phosphatase [He...   266   6e-73

>gi|300313256|ref|YP_003777348.1| low-specificity phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  266 bits (681), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 129/178 (72%), Positives = 148/178 (83%), Gaps = 1/178 (0%)

Query: 6   SKASAAAIANARQVRLMIFDVDGVLTDGGLYYGPEGEPVKRFNALDGHGIKMLQQFGGIA 65
           S   AAA+  A  +RLMIFDVDGVLTDGGL+YG +GE  KRFNALDGHGIK++QQFG  A
Sbjct: 8   STLPAAALEKAAGIRLMIFDVDGVLTDGGLFYGEDGEAFKRFNALDGHGIKLMQQFG-TA 66

Query: 66  TAIITARQSPIVLRRAKDLGIAHVFQGVHDKRVAFAQLLEQTGIAMSACGYLGDDVIDLP 125
            AIITARQSP VLRRA+DLGIAHVFQGVHDKR AF QLL+ TG+  + CGYLGDDVIDLP
Sbjct: 67  AAIITARQSPYVLRRARDLGIAHVFQGVHDKRQAFEQLLQHTGLNANVCGYLGDDVIDLP 126

Query: 126 VLTKVGFTACVVNGHHDVKQRADYITESAGGNGAAREVCDFILTAQGYYEAALAAYLA 183
           VLT+VGF ACV NGH +VK R+ Y+T+++GGNGA RE+CD +L AQG YEAALA YLA
Sbjct: 127 VLTRVGFKACVANGHREVKLRSHYVTQASGGNGAVREICDLVLAAQGNYEAALAPYLA 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 526,508
Number of extensions: 21485
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)