BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0250.p
         (125 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbasp...   189   6e-50
gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa...    83   8e-18
gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t...    81   2e-17
gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t...    78   2e-16
gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t...    75   2e-15

>gi|300313259|ref|YP_003777351.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  189 bits (480), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/94 (95%), Positives = 94/94 (100%)

Query: 32  IARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRA 91
           IARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRA
Sbjct: 154 IARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRA 213

Query: 92  YIINQGTVLASGSPDDIIADESVRRVYLGEHFRM 125
           YIINQGTVLASG+P++IIA+ESVRRVYLGEHFRM
Sbjct: 214 YIINQGTVLASGNPEEIIANESVRRVYLGEHFRM 247


>gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 82.8 bits (203), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 59/90 (65%)

Query: 32  IARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRA 91
            ARALAT P+ +LLDEP AG++P    E+   +  +K+RG  + + +H++R  +G+C+R 
Sbjct: 161 FARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERI 220

Query: 92  YIINQGTVLASGSPDDIIADESVRRVYLGE 121
            ++N G ++A G+PD I  ++ V   YLG+
Sbjct: 221 AVLNFGKIIAEGTPDQIKNNQEVIEAYLGK 250


>gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score = 81.3 bits (199), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query: 32  IARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRA 91
           I RAL + PR +LLDEP  G+ P+ + +I  I+R ++E G+ V + + N  + LG+ DR 
Sbjct: 145 IGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNANKALGVADRG 204

Query: 92  YIINQGTVLASGSPDDIIADESVRRVYLGE 121
           Y++  G V+ S +  +++A+  VR+ YLG 
Sbjct: 205 YVLENGHVVMSDTGANLLANSDVRKAYLGH 234


>gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 77.8 bits (190), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 32  IARALATDPRFVLLDEPFAGIDPIAVIEIQRIV-RFLKERGIGVLITDHNVRETLGICDR 90
           IAR + T PR +LLDEP AG++P    E+ +++ R  +E G+ VL+ +H++   +GI DR
Sbjct: 167 IARCMITKPRLLLLDEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDR 226

Query: 91  AYIINQGTVLASGSPDDIIADESVRRVYLGEH 122
             ++  G  + +G+P+ + +DE V + YLGE 
Sbjct: 227 ILVMEHGKPIVTGTPEQVRSDERVIKAYLGEE 258


>gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 234

 Score = 74.7 bits (182), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 55/89 (61%)

Query: 32  IARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRA 91
           IARAL T PR ++LDEP  G+ P+ V EI   +R +K  G+ +++ + N+     + DR 
Sbjct: 141 IARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATGMSIILVEQNLEVCTQLADRH 200

Query: 92  YIINQGTVLASGSPDDIIADESVRRVYLG 120
           YI+ QG ++  GS  + +ADE V+  YLG
Sbjct: 201 YIVEQGRIVYHGSNAEFLADEGVKDRYLG 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 296,642
Number of extensions: 10465
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 42
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 42
Length of query: 125
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,264,745
Effective search space: 63237250
Effective search space used: 63237250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)