BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0243.p (273 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 223 1e-59 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 204 6e-54 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 195 4e-51 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 185 4e-48 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 184 5e-48 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 223 bits (568), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/219 (50%), Positives = 147/219 (67%) Query: 24 VEALEKTYATHDGGKVQALGPISVSVPLGGFMTIVGPSGCGKSTLLKLLSGLIPRSDGSI 83 VE ++ D +V AL +S+ +P GGF+ +G SGCGKSTLL ++G +P S+G I Sbjct: 4 VENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRI 63 Query: 84 KVNGEEVHEPHRDIGMVFQSPVLLPWKTAIENVLLPARVLGLDMASSRVRAQELLDMVGL 143 ++G+ V P + G+VFQ LLPWK+ +NV L + G+ + SR RAQELL +VGL Sbjct: 64 SLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGL 123 Query: 144 ADFAHRYPNELSGGMQQRVAIARSLIHDPSILMMDEPFGALDAMTREVMNLELLRIWRKA 203 DFA P ELSGGM+QRV +AR+L +P IL+MDEPFGALD+MTRE M L+ +W + Sbjct: 124 QDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWART 183 Query: 204 GKTVVFVTHSIPEAIFLGTHVMVLSNRPGRIADLVTVDL 242 GK V F+THSI EA+FLGT V+V+S RPGRI D Sbjct: 184 GKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDF 222 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 204 bits (519), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 109/233 (46%), Positives = 145/233 (62%), Gaps = 1/233 (0%) Query: 14 NVVNGRAAIVVEALEKTYATHDGGKVQALGPISVSVPLGGFMTIVGPSGCGKSTLLKLLS 73 N N I ++ + K + T D +V AL I++ +P G F+ ++GPSGCGKSTLL ++ Sbjct: 2 NQTNASPRIRIQGVHKVFKTDDR-EVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIA 60 Query: 74 GLIPRSDGSIKVNGEEVHEPHRDIGMVFQSPVLLPWKTAIENVLLPARVLGLDMASSRVR 133 G S G I + + V EP D GMVFQ L PW T +NV + G A R Sbjct: 61 GFALPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQR 120 Query: 134 AQELLDMVGLADFAHRYPNELSGGMQQRVAIARSLIHDPSILMMDEPFGALDAMTREVMN 193 +LLD +GL DF R+P +LSGGM+QRVAIAR L D I++MDEPFGALDA+TR + Sbjct: 121 VTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ 180 Query: 194 LELLRIWRKAGKTVVFVTHSIPEAIFLGTHVMVLSNRPGRIADLVTVDLPAER 246 ELLRIW + KT+VFVTHSI EAI+L ++V++ RPG + + V+LP R Sbjct: 181 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLR 233 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 195 bits (495), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/243 (42%), Positives = 140/243 (57%), Gaps = 7/243 (2%) Query: 31 YATHDGGKVQALGPISVSVPLGGFMTIVGPSGCGKSTLLKLLSGLIPRSDGSIKVNGEEV 90 Y +DG A+ I + G F+ IVGPSGCGKST +KL +GL + GS+ ++G+ V Sbjct: 12 YLAYDGAAEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNRGSVVIDGQTV 71 Query: 91 HEPHRDIGMVFQSPVLLPWKTAIENVLLP-------ARVLGLDMASSRVRAQELLDMVGL 143 P + +GM FQ+P LLPW+T ++NVLLP R A RA LL VGL Sbjct: 72 TGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTERALSLLKTVGL 131 Query: 144 ADFAHRYPNELSGGMQQRVAIARSLIHDPSILMMDEPFGALDAMTREVMNLELLRIWRKA 203 +A ++P +LSGGMQQR +I R+LIH+P +L++DEPFGALDA TRE + L +W + Sbjct: 132 DGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAER 191 Query: 204 GKTVVFVTHSIPEAIFLGTHVMVLSNRPGRIADLVTVDLPAERGLDIMSTDAFGVYSKRI 263 V+ VTH + EA FL + V+S RPGRI LP L+ TD F + Sbjct: 192 RFNVILVTHDLREAAFLADTIYVMSKRPGRIVVRRENPLPRPCPLETTYTDGFNALVHEL 251 Query: 264 RSQ 266 R Sbjct: 252 REH 254 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 185 bits (469), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 108/258 (41%), Positives = 145/258 (56%), Gaps = 14/258 (5%) Query: 22 IVVEALEKTY--ATHDGGKVQALGPISVSVPLGGFMTIVGPSGCGKSTLLKLLSGLIPRS 79 + + +EKTY TH AL + + + G F++++GPSGCGKSTLLK+ +GL S Sbjct: 20 LSAQRVEKTYRNGTH------ALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPS 73 Query: 80 DGSIKVNG---EEVHEPHRDIGMVFQSPVLLPWKTAIENVLLPARVLGLDMASSRVRAQE 136 G I+ G V P R + MVFQ L+PW T +NV LP + + A + R Sbjct: 74 HGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAA 133 Query: 137 LLDMVGLADFAHRYPNELSGGMQQRVAIARSLIHDPSILMMDEPFGALDAMTREVMNLEL 196 L VGL F P ELSGGMQ R +IAR+L P++L+MDEPFGALD TR ++ +L Sbjct: 134 SLKRVGLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADL 193 Query: 197 LRIWRKAGKTVVFVTHSIPEAIFLGTHVMVLSNRPGRIADLVTVDLPAERGLDIMSTDAF 256 IW + TVVFVTHSI EA+FL + V+V++ RPGR+ V +D P R + F Sbjct: 194 RDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAPGPRDEAFRMSAPF 253 Query: 257 GVYSKRIRSQF---NTQG 271 Y K + N QG Sbjct: 254 MQYCKTLSDYLTLANQQG 271 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 184 bits (468), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 148/264 (56%), Gaps = 1/264 (0%) Query: 1 MSIVRDTPFSQEANVVNGRAAIVVEALEKTYATHDGGKVQALGPISVSVPLGGFMTIVGP 60 M+ + F+ AI + + + T DG AL S+SV G F+ +VGP Sbjct: 1 MNAINQHAFTPAGQAAQETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGP 60 Query: 61 SGCGKSTLLKLLSGLIPRSDGSIKVNGEEVHEPHRDIGMVFQSPVLLPWKTAIENVLLPA 120 +GCGKST L L++GL+ + G ++V G+ V+ IG VFQ+ + PW++ ENV Sbjct: 61 TGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGP 120 Query: 121 RVLGLDMASSRVRAQELLDMVGLADFAHRYPNELSGGMQQRVAIARSLIHDPSILMMDEP 180 G A + A E + VGL F YP++LSGGM++RVA+A++ I+ P IL+MDEP Sbjct: 121 LFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEP 180 Query: 181 FGALDAMTREVMNLELLRIWRKAGKTVVFVTHSIPEAIFLGTHVMVLSNRPGRIADLVTV 240 F ALD TR +M ELLR+W +VVFVTH + EAI L V VL+ RP + + + Sbjct: 181 FSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPI 240 Query: 241 DLPAERGL-DIMSTDAFGVYSKRI 263 DLP R + ++ F S+RI Sbjct: 241 DLPRPRVMEEVRYEQRFIDISRRI 264 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 819,119 Number of extensions: 31886 Number of successful extensions: 373 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 136 Length of query: 273 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 189 Effective length of database: 1,222,130 Effective search space: 230982570 Effective search space used: 230982570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)