BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0240.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate ph...   144   1e-35
gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillu...    57   2e-09

>gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate
           phosphonomutase [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 133/240 (55%), Gaps = 9/240 (3%)

Query: 6   EQAGFEAAYMTGFSLAS-SYGKPDIGLLTMTDMVQQATRIAEAVSLPVLVDADTGYPPPP 64
           ++AGF A Y++G  +A+ S G PD+G+  + D++    RI +   LP+LVD DTG+    
Sbjct: 35  KRAGFRAIYLSGGGVAAGSLGLPDLGISNLDDVLTDVRRITDVCDLPLLVDVDTGFGAS- 93

Query: 65  PPPPPXAANIVETVRAFEKAGIAGLHLEDQIMPKKCGAMAGKKLVPVEEMSLRLKAARAG 124
                 A N+  TV++  K G A +H+EDQ+  K+CG    K++V  +EM  R+KAA   
Sbjct: 94  ------AFNVARTVKSMIKFGAAAMHIEDQVGAKRCGHRPNKEIVSKQEMVDRIKAAVDA 147

Query: 125 RKSSEFVIIGRTDAMTIYGLDEVIARAKAMERAGADAVMAPSLSTPVELEAVASSVKIPV 184
           R    FVI+ RTDA+ + GLD  I RA A   AGAD +   +++     +  A++VK+P+
Sbjct: 148 RTDENFVIMARTDALAVEGLDAAIERAVACVEAGADMIFPEAITDLAMYKQFANAVKVPI 207

Query: 185 IYVAAE-TVRPNYTRQQLVAAGFAMSLYPLSLIQTTFKAQQDMLRSMFASGDTVQLVDGM 243
           +    E    P +T  +L  A   + LYPLS  +   KA +++ +++   G    +VD M
Sbjct: 208 LANITEFGSTPLFTVDELKGADVGLVLYPLSAFRAMNKAAENVYQAIRRDGTQKNVVDTM 267


>gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 434

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 11/91 (12%)

Query: 51  PVLVDADTGYPPPPPPPPPXAANIVETVRAFEKAGIAGLHLEDQIMP-KKCGAMAGKKLV 109
           P++ DA+ G+            N  E +++  +AG AG+H EDQ+   KKCG M GK LV
Sbjct: 146 PIVADAEAGFGG--------VLNAFELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLV 197

Query: 110 PVEEMSLRLKAAR--AGRKSSEFVIIGRTDA 138
           P  E   +L AAR  A    ++ ++I RTDA
Sbjct: 198 PTREAVEKLNAARLAADVMGTKTLVIARTDA 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 721,575
Number of extensions: 26267
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)