BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0236.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase [H...   122   3e-29

>gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 150/368 (40%), Gaps = 64/368 (17%)

Query: 32  ARAALADAGIRYEAIEQAY-----AGYVYGDSTVGQAMLYEVGLTGLPVINVNNNCATGS 86
           A+AA+  AG++ E I+  +     AG++Y D      +     L   P   + N CATGS
Sbjct: 34  AKAAIEHAGLQPEDIDSVHVGTFNAGFLYQDFPSSLVLNTLPQLRFKPATRLENACATGS 93

Query: 87  TALFLARQAIPP--------------------------------------------FFGG 102
            A+    QAI                                               FG 
Sbjct: 94  AAIHSGLQAIKAGESKHVLVIGFEKMTELATPQVGEVLLKACYAKEEAGIPGGFAGVFGK 153

Query: 103 AGQDYLDQYGIAPETFGQISVKARRHAANNPYAVFRTPVTLEEVMG----SPTVFGLLTR 158
             Q Y D++G   +    I+ K  ++   NPYA  R     E        +P V G L R
Sbjct: 154 IAQSYFDRFGDQSDALAMIAAKNHKNGMVNPYAHMRKDFGFEFCRNVSDKNPYVAGPLKR 213

Query: 159 LQCCPPTCGAAAAVLCSKRFARWFNLDTSVAIAAQAMTTDQADSFDSGDMRKLVGCGMTA 218
             C   + GAAA V+ +   A+      ++  A Q       + F     R         
Sbjct: 214 TDCSLISDGAAALVISAADVAK------AMPRAVQFRAAVHVNDFLPLSRRDPTRFEAAE 267

Query: 219 IAAERAYAEAGVGPEDIQVVELHDCFTANELISYEALQLTPSGTAEKFILDGDNTYGGKI 278
           +A ++A  +A +   D+ +VE HDCFT  EL+ YEA+ L P G   + I +G     GK+
Sbjct: 268 LAWKKALGDASLTLNDLSLVETHDCFTVAELLEYEAMGLAPHGQGARVIAEGITAKDGKL 327

Query: 279 VTNPSGGLLSKGHPLGATGLAQCAELTWQLRGRAERRQVDGARWGLQHNLGLGGACV--- 335
             NPSGGL SKGHP+GATG++       Q    A   Q+  AR+    N  +GGA V   
Sbjct: 328 PVNPSGGLKSKGHPVGATGVSMHVMAAMQAAHDAGDMQIANARYAGVFN--MGGAAVANY 385

Query: 336 VTVYEKTN 343
           V++ E+ N
Sbjct: 386 VSILERVN 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,065,658
Number of extensions: 43410
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)