BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0230.p
         (358 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A...    59   4e-10

>gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 18/204 (8%)

Query: 8   LACTGAIAGALISIPLAVNAQAREK--VTIAIGTDVLDASQVNNTSLPIYTK----CWEN 61
           L   G       S   +  AQA EK  V+IA+G   L         LP+        +++
Sbjct: 9   LIAAGLFLAGYFSFNGSAGAQALEKPKVSIAVGGKNL------FYYLPLTIAEQLGYFKD 62

Query: 62  AGLDVTLQP-TNSTTAMQAVLTGQADMVNMGPAAAIIARTKGAPLKAVYLNMRHNFQFPV 120
            GL V +        A+QA++ G AD+V+      I  + K  P+ A  L  R   Q  +
Sbjct: 63  EGLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAP-QIVL 121

Query: 121 VLDSSPV---KTIADFKGKTIGVLSYGSQMVQIFKGMLTEAGVNPDKDVTFVETGSGAQA 177
            +++  +   KT+AD KGK IGV + GS    +   +L +AG+ P  DV+F+  G+ A A
Sbjct: 122 AVNNKTMPNYKTVADLKGKKIGVTAPGSSTSVMASYVLAKAGLKPS-DVSFIGVGAAAGA 180

Query: 178 VTALSKGRVDIWGTWDSQIATAEN 201
           ++A+  G++D     D  I+  E 
Sbjct: 181 ISAVRSGQIDAIANLDPVISMLEQ 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,043,602
Number of extensions: 42050
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,212,660
Effective search space: 329843520
Effective search space used: 329843520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)