BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0224.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbasp...    71   5e-14
gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbasp...    63   1e-11
gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurizatio...    60   1e-10

>gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score = 70.9 bits (172), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 20  IFARIAEGSIDRENDRDLPYEAVQWLKDAGFTSLRVPVEHGGSGVTLPQFFSLLIRLAEA 79
           + A  A  +  R+ +R LP+E ++    +G  ++ VP  HGG G +      ++  ++ A
Sbjct: 33  LAAEFATSAAQRDRERILPFEQIERFSQSGLWAITVPRSHGGIGASWQTVAEVIRLISAA 92

Query: 80  ESNLPQILRVNAGFTELLLERKDDEDTRHWLGVIGKGETFGAAASERTGATGNSVTVTPD 139
           + ++ QI + + G   L+      E  R +   +  G   G A  ER G     V     
Sbjct: 93  DPSIGQIPQNHFGNLNLIARLASQEQQRLFFAEVLDGARLGNAGPERNGKNVLDVRTRAT 152

Query: 140 PDKRP--DHFLLNGEKYYSTGTLYADWILVRA 169
            D+      +LLNG ++YSTG LYA WI  RA
Sbjct: 153 LDRAAGDGSYLLNGTRFYSTGALYAHWIPSRA 184


>gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 69/135 (51%)

Query: 31  RENDRDLPYEAVQWLKDAGFTSLRVPVEHGGSGVTLPQFFSLLIRLAEAESNLPQILRVN 90
           R+ +R LP++ ++    +G   + VP E+GG+GV+      ++  ++ A+ ++ QI + +
Sbjct: 56  RDRERKLPWDELERYVRSGLWGITVPKEYGGAGVSYGTLAEVIATISAADGSIGQIPQNH 115

Query: 91  AGFTELLLERKDDEDTRHWLGVIGKGETFGAAASERTGATGNSVTVTPDPDKRPDHFLLN 150
               EL+     +   R +   + +G+ FG A +E    T +        +     + ++
Sbjct: 116 FYAVELIRVNGSESQKRFFFERVLQGDRFGNALAELGTKTSHDRKTRLSRNAHGPGYRID 175

Query: 151 GEKYYSTGTLYADWI 165
           G K+Y+TG LYADW+
Sbjct: 176 GRKFYATGALYADWV 190


>gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurization
           flavin reductase [Herbaspirillum seropedicae SmR1]
          Length = 419

 Score = 59.7 bits (143), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 2/148 (1%)

Query: 23  RIAEGSIDRENDRDLPYEAVQWLKDAGFTSLRVPVEHGGSGVTLPQFFSLLIRLAEAESN 82
           R+A+G+ +R+  R  P E ++    +G  ++ VP   GG+ V+      ++  ++ A+ +
Sbjct: 48  RLAQGASERDQLRRWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPS 107

Query: 83  LPQILRVNAGFTELLLERKDDEDTRHWLGVIGKGETFGAAASERTGATGNSVTVTPDPDK 142
           L QI + + GF   +    D E  R +     +G  +G A SE +G+   +   T   D 
Sbjct: 108 LGQITQNHLGFVAAVRTVSDPEQQRRFFADFLRGVRWGNAFSE-SGSKRAADFETRFVDA 166

Query: 143 RPDHFLLNGEKYYSTGTLYADWILVRAQ 170
             DH ++ G+K+YSTG L A ++ + A 
Sbjct: 167 -GDHVIVTGKKFYSTGALLAHYVPIVAN 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 621,722
Number of extensions: 26133
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 3
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)