BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0223.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbasp...    65   3e-12
gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurizatio...    64   4e-12
gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbasp...    58   3e-10

>gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score = 64.7 bits (156), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 4   DAVAFTQARTRTFGVPGVSSPRENPLVHRVVGRLASLAWSAEQLVNAVANAIHAVHQARL 63
           D + F + R+R +   GV    ++PL  R VG L     +AE L+      + A   A  
Sbjct: 279 DLLTFVRTRSRAWVDSGVERAVDDPLTIREVGDLTIQLHAAEALLRRAGRKVDAAAAA-- 336

Query: 64  AGTAKPEDYIALDVQTFQAQQVVIGQV-LEAATLLFEVGGASATSDKRRLDRHWRNARTL 122
                 ED +A         +V+  +V L A + LFE+ G+ +T  +  LDRHWRNART 
Sbjct: 337 ----PDEDSVAAASIAVAEARVLTTEVSLAAGSKLFELAGSQSTLAEHNLDRHWRNARTH 392

Query: 123 ASHNPATQREAAIGDYHLNDNPP 145
             H+P   +  AIG+Y LN   P
Sbjct: 393 TLHDPVRWKYHAIGNYVLNGKKP 415


>gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurization
           flavin reductase [Herbaspirillum seropedicae SmR1]
          Length = 419

 Score = 64.3 bits (155), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 13/151 (8%)

Query: 1   VQRDAVAFTQARTRTFGVPGVSSPR----ENPLVHRVVGRLASLAWSAEQLVNAVANAIH 56
           + R A+A TQ   RT   P + S R    E+P   + +G L     ++E L+     AI 
Sbjct: 270 IARAAIADTQDFVRTKSRPWIDSQRDHAWEDPYSIQAIGDLQIRLHASEALLERAGRAID 329

Query: 57  AVHQARLAGTAKPEDYIALDVQTFQAQQVVIGQ--VLEAATLLFEVGGASATSDKRRLDR 114
           A         A P+       Q   A+  V+     + A   LFE+ G  +T  +  LDR
Sbjct: 330 A-------AVAAPDAQSVAHAQILTAEAKVLSTEIAIHATNKLFELAGTRSTLGQYNLDR 382

Query: 115 HWRNARTLASHNPATQREAAIGDYHLNDNPP 145
           HWRNART   H+P   + A +G+Y+LN   P
Sbjct: 383 HWRNARTHTLHDPVRWKYAIVGNYYLNGVKP 413


>gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score = 58.2 bits (139), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 3   RDAVAFTQARTRTFGVPGVSSPRENPLVHRVVGRLASLAWSAEQLVNAVANAIHAVHQAR 62
           +D +AF   R+R +   G+    ++P + R +G L SL   A   +   A A+     A+
Sbjct: 268 QDTIAFVTTRSRPYVDSGLERASDDPYILRDIGNL-SLRLHAADALLEDAAALLDSLPAQ 326

Query: 63  LAGTAKPEDYIALDVQTFQAQQVVIGQVLEAATLLFEVGGASATSDKRRLDRHWRNARTL 122
           L+     E          +A+ +     L A+  LFE+ G++AT     LDRHWRNAR  
Sbjct: 327 LSF----EQMAQASAAVAEAKVLSTELALLASEKLFELSGSAATLASHNLDRHWRNARVH 382

Query: 123 ASHNPATQREAAIGDYHLNDNPP 145
             H+P   +  A+G+Y LN  PP
Sbjct: 383 TLHDPVRWKYFAVGNYALNGTPP 405


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 443,346
Number of extensions: 14442
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)