BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0221.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 164 9e-42 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 148 4e-37 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 136 2e-33 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 127 9e-31 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 102 3e-23 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 164 bits (414), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 129/206 (62%), Gaps = 4/206 (1%) Query: 8 RVHAIVAAALISVMGLTQAQAADKPLRVGVRGGTDEQIWEVVTKVARKN--GLNVEAVVI 65 R+ ++ + L S++ QA AAD+ +RVGV G QI+E +V ++ G V+ + Sbjct: 11 RLSTLMVSMLASLVLNAQA-AADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEF 69 Query: 66 SGAASPNEALNNGDLDANSFQHIPFLRDQIKQRGYKLSVVGNTYISPIAFYSKKYKSIRD 125 + PN AL+ G+LDANS+QH PFL QIK RGYKL G T I P+A YS+KY+ + D Sbjct: 70 NDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLED 129 Query: 126 LPDGAKVAIPNDPSNQTRALVVLRDAGLITLRDGFDPFTGT-VSLNDITAYKKKITLTEA 184 +P GA++ IPNDP+N++R L++L+ G I LR G DP TGT + DIT KK E Sbjct: 130 VPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVEI 189 Query: 185 ASVVLARSLEDVDTAAIVNTFAYQAG 210 + L R+L+D+D +A+ +A +AG Sbjct: 190 DAAQLPRTLDDLDASAVNADYAAKAG 215 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 148 bits (373), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 131/208 (62%), Gaps = 1/208 (0%) Query: 8 RVHAIVAAALISVMGLTQAQAADKPLRVGVRGGTDEQIWEVVTKVARKNGLNVEAVVISG 67 R+ AI A +L V L QAQ K ++VG+ G+ E I++VV KVA ++GL ++ VV S Sbjct: 12 RLAAIGALSLALVPQLGQAQDKQK-IKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSD 70 Query: 68 AASPNEALNNGDLDANSFQHIPFLRDQIKQRGYKLSVVGNTYISPIAFYSKKYKSIRDLP 127 PN AL GDLDAN+FQH P+L QI RGY++ VG T +P+ YS+K++S+ LP Sbjct: 71 YLQPNAALAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQLP 130 Query: 128 DGAKVAIPNDPSNQTRALVVLRDAGLITLRDGFDPFTGTVSLNDITAYKKKITLTEAASV 187 GA + I NDPSN RAL++L+ AGLI L+ G + D+ +K+ L E + Sbjct: 131 QGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDAA 190 Query: 188 VLARSLEDVDTAAIVNTFAYQAGXAMKR 215 L RSL+D+ A+I N +A++AG ++++ Sbjct: 191 QLPRSLDDLAAASINNDYAFKAGLSLQK 218 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 6/183 (3%) Query: 18 ISVMGLTQAQAADKPLRVGVRGGTDEQIWEVVTKVARKNGLNVEAVVISGAASPNEALNN 77 ++V+ L AQAADK LR+GV G V K A++ G++V+ V + +PN AL+ Sbjct: 11 LTVLSLQAAQAADK-LRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPNVALDA 69 Query: 78 GDLDANSFQHIPFLRDQIKQRGYKLSVVGNTYISPIAFYSKKYKSIRDLPDGAKVAIPND 137 GDLD N FQH PFL + I++ GYKL+ G +S + YS KYKS+ LP GAKV I ND Sbjct: 70 GDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIAND 129 Query: 138 PSNQTRALVVLRDAGLITLRDGFDPFTGTV-SLNDITAYKKKITLTEAASVVLARSLEDV 196 P NQ RAL++L++ GLI L+ P G + S++DI +K++ E L R DV Sbjct: 130 PVNQGRALLLLQNVGLIKLK----PKVGYLGSIDDIIDNPRKLSFVEVEGPQLVRITPDV 185 Query: 197 DTA 199 D A Sbjct: 186 DLA 188 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 127 bits (319), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 113/198 (57%), Gaps = 8/198 (4%) Query: 13 VAAALISVMGLTQAQAADKPLRVGVRGGTDEQIWEVVTKVARKNGLNVEAVVISGAASPN 72 +AA L+S Q Q +++GV G +I E V K+ K+G+ ++ + + PN Sbjct: 15 LAAGLVSAPAFAQDQ-----IKMGVTAGPHAEIMEQVKKLLEKDGVQMKVIEFTDYIQPN 69 Query: 73 EALNNGDLDANSFQHIPFLRDQIKQRGYKLSVVGNTYISPIAFYSKKYKSIRDLPDGAKV 132 AL GDLDANS+QH P+L QIK RGYK VG+T P+ YSKK KS+ DL GA+V Sbjct: 70 AALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDLKQGARV 129 Query: 133 AIPNDPSNQTRALVVLRDAGLITLRDGFDPFTGTVSLNDITAYKKKITLTEAASVVLARS 192 +PNDP+N RAL+VL+ G+I L+ D L DI KKI + E + L RS Sbjct: 130 GVPNDPTNGGRALLVLQAKGVIKLK--ADAGLKATPL-DIVENPKKIKIVELDAAQLPRS 186 Query: 193 LEDVDTAAIVNTFAYQAG 210 L+D D A I +A AG Sbjct: 187 LDDFDAAVINGNYAESAG 204 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 101/203 (49%), Gaps = 12/203 (5%) Query: 10 HAIVAAALISVMGLTQAQAADKPLRVGVRGGTDEQIWEVVTKVARKNGLNVEAVVISGAA 69 H AAL +G A AADK L + +I E + K G++++ V + Sbjct: 8 HLFAGAALAFSVG---AHAADK-LVIAATPVPHAEILEHIKPALAKEGIDLQVKVFTDYV 63 Query: 70 SPNEALNNGDLDANSFQHIPFLRDQIKQRGYKLSV---VGNTYISPIAFYSKKYKSIRDL 126 P N +D N F H P+L DQ K + +K + V ++ P A YS+KYK I D+ Sbjct: 64 QPAAQTNEKQVDGNFFLHQPYL-DQFK-KSHKNDIEVPVAKVHVEPFAAYSQKYKKIADI 121 Query: 127 PDGAKVAIPNDPSNQTRALVVLRDAGLITLRDGFDPFTGTVSLNDITAYKKKITLTEAAS 186 P+GA +AIPNDPSN RAL++L GLI L+D + + + DI KK+ + Sbjct: 122 PNGATIAIPNDPSNSGRALLLLARNGLIKLKDNTN---ISATQKDIVENPKKLKFRALEA 178 Query: 187 VVLARSLEDVDTAAIVNTFAYQA 209 L R L VD A I +A +A Sbjct: 179 ATLPRVLNQVDVALINTNYALEA 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 644,350 Number of extensions: 25122 Number of successful extensions: 83 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 5 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)