BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0220.p
         (59 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip...    61   2e-11
gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip...    60   5e-11

>gi|300311120|ref|YP_003775212.1| metal ion ABC transporter
           periplasmic component/surface antigen protein
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 2   RDGIAVEKRENNPYVNIIVVREQDKNAAWVAPLVKAYQSEEVRQFIQKQYGGSVVPVF 59
           +D IAVE      Y NII  R +DK+  WV  LV+AY SEEVR+FI+ ++ GS+VP F
Sbjct: 218 KDTIAVEDPRGR-YANIIATRAEDKDRPWVRKLVQAYHSEEVRKFIETEFKGSLVPAF 274


>gi|300310325|ref|YP_003774417.1| metal ion ABC transporter
           periplasmic component/surface antigen protein
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 59.7 bits (143), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 1   VRDGIAVEKRENNPYVNIIVVREQDKNAAWVAPLVKAYQSEEVRQFIQKQYGGSVV 56
            +D IAVE     PY N+I VR  DK+  WVA LVKAY S EV++F+ ++Y GSV+
Sbjct: 208 TKDAIAVEA-STGPYANVIAVRIADKDKPWVAKLVKAYHSPEVKKFVLEKYKGSVI 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 185,359
Number of extensions: 4857
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 59
Length of database: 1,619,870
Length adjustment: 32
Effective length of query: 27
Effective length of database: 1,468,350
Effective search space: 39645450
Effective search space used: 39645450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)