BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0218.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme... 199 2e-52 gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme... 159 1e-40 gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme... 136 2e-33 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 55 3e-09 >gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 199 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/205 (51%), Positives = 145/205 (70%), Gaps = 6/205 (2%) Query: 19 MVSASALIAIGLGLLLAIVLTVTAKSSLYPKPRLHRGLSVTVNIFRAVPFIIMLVALLPV 78 MVS S +A+ G+ LA++L V+A PRLHR L +N FRA PFI++LVAL+P+ Sbjct: 1 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60 Query: 79 TRFLVGTTLGTWAAVVPLTVNLIPFYARIAQVSLNDVDPGLVEAARAMGCRRRHIIRHVL 138 TR + GTT+G WAA+VPL ++ PF+ARI +VSL +VDPGLVEAA+A+GCR+ I+ HV Sbjct: 61 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120 Query: 139 LPEALPGIVSGMTVSVIAMINASAIKFIYXGLGAVGAGGLGDLAIRYGYERYETRVMFEV 198 LPEALPGIV G T++++A+I++SA+ G DLAIRYGY+R++T+VM V Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLG------DLAIRYGYQRFDTQVMVIV 174 Query: 199 IVILIALVSVIQLVGERVSRRFDHR 223 I +LI LVS++Q G+ RR +R Sbjct: 175 IAMLIVLVSLVQRTGDSYVRRLRNR 199 >gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/223 (42%), Positives = 140/223 (62%), Gaps = 6/223 (2%) Query: 1 MSLPPLNKYFQAFFETLLMVSASALIAIGLGLLLAIVLTVTAKSSLYPKPRLHRGLSVTV 60 MS ++ + +F ETL+MV S ++ LG+ L I L +T + P +R + V Sbjct: 1 MSSELIDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLV 60 Query: 61 NIFRAVPFIIMLVALLPVTRFLVGTTLGTWAAVVPLTVNLIPFYARIAQVSLNDVDPGLV 120 N R+ PFII+LVA++P+TRF VGT++GT AA+VPLT+ PF AR+ + +L +VD GLV Sbjct: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 Query: 121 EAARAMGCRRRHIIRHVLLPEALPGIVSGMTVSVIAMINASAIKFIYXGLGAVGAGGLGD 180 EAA+AMG II VL+PEA GIV+G+T++ ++++ SA+ G G D Sbjct: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLG------D 174 Query: 181 LAIRYGYERYETRVMFEVIVILIALVSVIQLVGERVSRRFDHR 223 L IRYGY+R+ VM V++ILI V ++Q +G+ + R+ HR Sbjct: 175 LGIRYGYQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 >gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 229 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 134/213 (62%), Gaps = 6/213 (2%) Query: 11 QAFFETLLMVSASALIAIGLGLLLAIVLTVTAKSSLYPKPRLHRGLSVTVNIFRAVPFII 70 A ETL M S + LGL L I+L +T + L + L+ LS+ VN+ R+VPF+I Sbjct: 23 DATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLEQRGLYLVLSLVVNVLRSVPFLI 82 Query: 71 MLVALLPVTRFLVGTTLGTWAAVVPLTVNLIPFYARIAQVSLNDVDPGLVEAARAMGCRR 130 +L+ L+P T +LVGT+LG A+ PL + PF+AR+ + L ++D G++EA AMG RR Sbjct: 83 LLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRGILEACTAMGARR 142 Query: 131 RHIIRHVLLPEALPGIVSGMTVSVIAMINASAIKFIYXGLGAVGAGGLGDLAIRYGYERY 190 R II LLPEALPG+++ +T++ I +++ +A+ + G G DLAIRYGY+R+ Sbjct: 143 RQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLG------DLAIRYGYQRF 196 Query: 191 ETRVMFEVIVILIALVSVIQLVGERVSRRFDHR 223 +T VM + IL+ LV ++Q G+R+ RF + Sbjct: 197 QTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 1 MSLPPLNKYFQAFFE----TLLMVSASALIAIGLGLLLAIVLTVTAKSSLYPKPRLHRGL 56 + PL Y+ F TL M + + ++ + +G+ +A AK+S P L RG Sbjct: 5 LDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAF-----AKNS--PHRWLARGC 57 Query: 57 SVTVNIFRAVPFIIMLVALLPVTRFLVGTTLGTWAA-VVPLTVNLIPFYARIAQVSLNDV 115 S + + R PF++ + LL +G + T+AA V+ + +N+ + A I + L+ V Sbjct: 58 SAYIEVVRNTPFLVQIF-LLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSV 116 Query: 116 DPGLVEAARAMGCRRRHIIRHVLLPEALPGIVSGMTVSVIAMINASAI 163 G +EAA+ +G I HV+L A+ + +T + M+ ASA+ Sbjct: 117 PRGQIEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAM 164 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.144 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 483,267 Number of extensions: 15784 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 7 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)