BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0213.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase [Herb...   369   e-103
gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase [Herb...   350   8e-98

>gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/289 (64%), Positives = 221/289 (76%), Gaps = 5/289 (1%)

Query: 4   RIDAHQHFWRYRAEDYPWIGAGMDVLAQDKLPADLLPLLRAHQLDASIAVQARSGRDETR 63
           RIDAHQHFW Y+ + YPWIGAGM++LA D+ P  L PLL A  L  SIAVQAR+GR+ET 
Sbjct: 5   RIDAHQHFWFYQPQAYPWIGAGMELLACDRTPGQLQPLLDAEGLGQSIAVQARAGREETG 64

Query: 64  FLLGLAQEHDFIAGVVGWENLAVPDLGERLDEWHGGDKLLGFRHQVQDEADAGAFLEHAD 123
           FLL LA+ +  IAGVVGWE+LA P L   ++ W G DKL+GFRHQ+QDEAD G  ++   
Sbjct: 65  FLLELARGNRRIAGVVGWEDLASPHLAANVERW-GRDKLVGFRHQLQDEADVGGCVDAPA 123

Query: 124 FNRGVALLQERHYVYDVLVFESQLADTQAFCARHDKHWLVLDHLGKPALREFGKNGGNSD 183
           FN GVA LQ +  VYDVLV+  Q+A+ QAFCARHD+HWLVLDHLGKPAL EFG+     D
Sbjct: 124 FNAGVAWLQRQGMVYDVLVYARQMAEVQAFCARHDRHWLVLDHLGKPALTEFGRG----D 179

Query: 184 DALWRWEKELLALGALPHVVCKLSGLVTEADWQNGLQPADYQHIRICLDTALEAFGPQRL 243
            A   W+++L AL ALPHV CKLSGLVTEADWQ GL+  D+ +I +CLDTALEAFGPQRL
Sbjct: 180 TAFEGWQRQLRALAALPHVACKLSGLVTEADWQRGLRQKDFDNISLCLDTALEAFGPQRL 239

Query: 244 MFGSDWPVCLLADSYGKVADLIADWATSNLNKDEQDALWGGTAARCYGI 292
           MFGSDWPVCLLA SY KVA ++ +WA + L+  EQ+ LWG TAARCYG+
Sbjct: 240 MFGSDWPVCLLAASYAKVAGVVREWAATRLSAAEQELLWGATAARCYGL 288


>gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  350 bits (898), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 171/290 (58%), Positives = 210/290 (72%), Gaps = 5/290 (1%)

Query: 3   MRIDAHQHFWRYRAEDYPWIGAGMDVLAQDKLPADLLPLLRAHQLDASIAVQARSGRDET 62
           +RIDAHQHFWRYR+EDYPWIGAGMD+LAQD+LP    PLL A  L ASI VQAR GRDET
Sbjct: 13  LRIDAHQHFWRYRSEDYPWIGAGMDLLAQDRLPYQFQPLLEAQGLHASITVQARQGRDET 72

Query: 63  RFLLGLAQEHDFIAGVVGWENLAVPDLGERLDEWHGGDKLLGFRHQVQDEADAGAFLEHA 122
            FLL +A+    IAG++GWE+L+ PDL E+++ W G  KLLG RHQ+Q+  DA   L  A
Sbjct: 73  AFLLEMARRDKRIAGIIGWEDLSAPDLAEQMERW-GRHKLLGLRHQLQEHDDANTLLTPA 131

Query: 123 DFNRGVALLQERHYVYDVLVFESQLADTQAFCARHDKHWLVLDHLGKPALREFGKNGGNS 182
             ++GV  LQER Y  DVL  E  L   + FCARHD+HW+VL+HLGKPAL+EF K     
Sbjct: 132 PLDQGVRWLQERSYTLDVLAHERHLPQLRQFCARHDQHWVVLNHLGKPALKEFRKGRA-- 189

Query: 183 DDALWRWEKELLALGALPHVVCKLSGLVTEADWQNGLQPADYQHIRICLDTALEAFGPQR 242
             A  RW +EL  L A+PHV CK+SGL+TEADW  GL   D++HI  CLDTAL+ FGPQR
Sbjct: 190 --AFERWRQELRELTAMPHVACKISGLLTEADWLRGLCTRDFEHIVQCLDTALDLFGPQR 247

Query: 243 LMFGSDWPVCLLADSYGKVADLIADWATSNLNKDEQDALWGGTAARCYGI 292
           LMFGSDWPVCLLA SY +V  ++ +W+ + L   +QDALWG ++AR YG+
Sbjct: 248 LMFGSDWPVCLLAASYSRVVTVVREWSATRLCPSDQDALWGESSARIYGL 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,096,903
Number of extensions: 50860
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)