BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0205.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046...   787   0.0  
gi|300310362|ref|YP_003774454.1| galactonate dehydratase [Herbas...    61   2e-10

>gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/425 (87%), Positives = 401/425 (94%)

Query: 1   MTTITSMRVLDVRFPTSKTLDGSDAMNPDPDYSAAYVILETDQSGLEGHGLTFTIGRGNE 60
           MT IT++RVLDVRFPTS++LDGSDAMNPDPDYSAAYVIL+TD + L+GHGLTFTIGRGNE
Sbjct: 1   MTKITALRVLDVRFPTSQSLDGSDAMNPDPDYSAAYVILDTDNAALKGHGLTFTIGRGNE 60

Query: 61  ICCAAIKAMEHLVVGLDLAWVSEDMGRFWRTITSDSQLRWIGPDKGAIHLATGAVVNAVW 120
           ICCAAI+AMEHLVVGL+L W++ DMGRFWR +TSDSQLRWIGPDKGAIHLATGAVVNA W
Sbjct: 61  ICCAAIRAMEHLVVGLELEWIAADMGRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAW 120

Query: 121 DLWAKAEGKPLWKLVAGMSPEELVRSIDFRYITDCITPDEALALLRAQAPGKAERIRLLE 180
           DLWAKAEGKP+WKLVA MSPEELVR+IDFRYITDCITPDEALALLR +  GKAER+R+LE
Sbjct: 121 DLWAKAEGKPVWKLVADMSPEELVRTIDFRYITDCITPDEALALLREKEAGKAERLRVLE 180

Query: 181 QNGYPCYTTSAGWLGYDDAKLRRLCKEAIDGGFNHIKLKVGRDLADDKRRVTIAREVIGP 240
           Q GYPCYTTSAGWLGY+DAKLRRLC+EAID GFNH+KLKVGRDLADDKRRVTIAREV+GP
Sbjct: 181 QEGYPCYTTSAGWLGYEDAKLRRLCQEAIDQGFNHVKLKVGRDLADDKRRVTIAREVLGP 240

Query: 241 DRHLMIDANQVWEVDQAIEWVNELAFAKPWFIEEPTSPDDVEGHRKIREGIGAVKVATGE 300
           +R LMIDANQVWEV QAI+WVN+LAFA+PWFIEEPTSPDDVEGHRKIREGIGAVKVATGE
Sbjct: 241 ERKLMIDANQVWEVHQAIDWVNQLAFAQPWFIEEPTSPDDVEGHRKIREGIGAVKVATGE 300

Query: 301 MCQNRVLFKQFIMRGAIDVVQIDSCRLGGVNEILAVLLMAAKYKLPVCPHAGGVGLCEYV 360
           MCQNRVLFKQFIMR AIDVVQIDSCRLGGVNEILAV+LMAAKY   VCPHAGGVGLCEYV
Sbjct: 301 MCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMAAKYGKVVCPHAGGVGLCEYV 360

Query: 361 QHLSMIDYVCISGTLEGRVTEYVDHLHEHFIDACVVKGAAYMPPTAPGFSITMKPESLEQ 420
           QHLSMIDY+CISG+ EGRVTEYVDHLHEHF+D CVVK AAYMPP+ PGFSI MKP+SLEQ
Sbjct: 361 QHLSMIDYLCISGSKEGRVTEYVDHLHEHFVDPCVVKNAAYMPPSRPGFSIEMKPQSLEQ 420

Query: 421 YRFRG 425
           YRFRG
Sbjct: 421 YRFRG 425


>gi|300310362|ref|YP_003774454.1| galactonate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 68/326 (20%)

Query: 36  YVILETDQSGLEGHGLTFTIGRGNEICCAAIKAMEHLVVGLDLAWVSEDMGRFWRTITSD 95
           ++ +ETD+ G+ G G     GR + +  AA++ +   ++G D      ++   W  +   
Sbjct: 17  FLKIETDE-GVVGWGEPIVEGRAHSVA-AAVEELSDYLIGKD----PRNIEDHWTVLYRG 70

Query: 96  SQLRWIGPDKGAIHL-ATGAVVNAVWDLWAKAEGKPLWKLVAGMSPEELVRSIDFRYITD 154
              R      GAIH+ A   +  A+WD+  K  G P+ +L+ G                 
Sbjct: 71  GFYR-----GGAIHMSALAGIDQALWDIKGKDLGVPVHQLLGGAV--------------- 110

Query: 155 CITPDEALALLRAQAPGKAERIRLLEQNGYPCYTTSAGWLGYDDAKLRRLCKEAIDG-GF 213
                                     +N    Y+    W+G D         ++    GF
Sbjct: 111 --------------------------RNSIRVYS----WIGGDRPADTAAAAKSAVARGF 140

Query: 214 NHIKLKVGRDL----ADDKRRVTIA-----REVIGPDRHLMIDANQVWEVDQAIEWVNEL 264
             +K+    +L    + DK  +T+A     RE +GP+  + +D +       A   + EL
Sbjct: 141 TAVKMNGTEELQFIDSHDKIELTLANVQAVREAVGPNVGIGVDFHGRVHKPMAKALIKEL 200

Query: 265 AFAKPWFIEEPTSPDDVEGHRKIREGIGAVKVATGEMCQNRVLFKQFIMRGAIDVVQIDS 324
              K  FIEEP   ++ E  ++I   + +  +A GE   +R  FK+ +  G +D++Q D 
Sbjct: 201 EPYKLMFIEEPVLSENAEALKEIAH-LTSTPIALGERLYSRWDFKRILSEGYVDIIQPDV 259

Query: 325 CRLGGVNEILAVLLMAAKYKLPVCPH 350
              GG+ E   + +MA  Y + +  H
Sbjct: 260 SHAGGITETRKIAMMAEAYDVALALH 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,454,270
Number of extensions: 63681
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)