BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0199.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309825|ref|YP_003773917.1| TetR family transcription regul...   199   9e-53

>gi|300309825|ref|YP_003773917.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  199 bits (505), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 114/140 (81%)

Query: 1   VRTNMLPLLEEAEGMVDRYEGHSADLLRDLILGWWASVADTKLNGISKLMMAESGNFPEL 60
           VR +MLPLL+EAE  VD ++GH+ADLLR+LILGWW   + + L GI+KLM+AESGNFPEL
Sbjct: 68  VRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPEL 127

Query: 61  AQFYHAEVITRCDATIVRMLERGIRRGEFRAIDAEHMKRVIVAPVLMLMLWSQSFGPCAI 120
           A+FYH E+ +R DAT+VR+LERG+ RGEFR +DA  +K+VI AP++MLMLW QS  PCAI
Sbjct: 128 ARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAI 187

Query: 121 EPVEPGAYLDNFIDLCLNGL 140
            P++  AYL + IDLC++GL
Sbjct: 188 APIDSAAYLASLIDLCVHGL 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 449,680
Number of extensions: 16918
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)