BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0197.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313717|ref|YP_003777809.1| cobalt-zinc-cadmium resistance ...    59   3e-10
gi|300309609|ref|YP_003773701.1| transport/efflux transmembrane ...    55   2e-09

>gi|300313717|ref|YP_003777809.1| cobalt-zinc-cadmium resistance
           cation efflux system transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 11/169 (6%)

Query: 1   VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60
           V  D     + DL  +  E  V   D+  V+ G++V VR      + +GK+  +      
Sbjct: 228 VKEDANAFLISDLSSVWAEIIVSPKDMQFVRTGEKVTVRATAFDASASGKISYVGSLIGE 287

Query: 61  GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120
            SR+   +V + NPD+  R G+F +  +  D+    + V A A+Q    K+ ++    G 
Sbjct: 288 QSRTAKAHVILPNPDDSWRPGLFVNVEVVSDEAQVPVAVSAEALQTVEEKSVIFVRVPGG 347

Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQ-------EGARIVKANLGNLNA 162
              + VVTG     S G  VEI SGL         G+  +KA LG  +A
Sbjct: 348 FAAQQVVTGR----SNGKFVEIRSGLNAGDEYAATGSFAIKAELGKGSA 392


>gi|300309609|ref|YP_003773701.1| transport/efflux transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 7/122 (5%)

Query: 49  GKVVRINPATQSGSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDA--VLTVPATAIQN 106
           GKV  ++PA  + SR+  V V ++ PD  +R GM  + ++T     A  VL +PATA+ +
Sbjct: 247 GKVREVSPAADAQSRTYRVKVTLEQPDPAVRLGMTGEVAITPAASSAAPVLLLPATALFH 306

Query: 107 EGGKAYVYTI-ENGKLTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTP 165
           +G +  ++ + E G+L  R V     G  S    + +S G+    ++V   +  L AG  
Sbjct: 307 QGDRPALWVVGEQGQLELRPVTVAAYGERS----ISVSQGVTASDKVVVQGVHTLTAGEK 362

Query: 166 VK 167
           VK
Sbjct: 363 VK 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.134    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 533,741
Number of extensions: 22509
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 3
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)