BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0195.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate O-methyl...   364   e-102
gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate carboxyl...    79   3e-16

>gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate
           O-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  364 bits (935), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/221 (80%), Positives = 195/221 (88%), Gaps = 6/221 (2%)

Query: 1   MNIEQARFNMIEQQIRPWNVLAQDVLDLLTVVRREEFVPAAHRSLAFFDTEIPLPGGENM 60
           MNIEQARFNMIEQQIRPWNVLAQDVLDLL VV+REEFVPAAHRSLAFFDTEIPLPGGENM
Sbjct: 1   MNIEQARFNMIEQQIRPWNVLAQDVLDLLMVVKREEFVPAAHRSLAFFDTEIPLPGGENM 60

Query: 61  LAPKVEARILQEANVKKHEQVLEIGAGSGYMAALLASKARHVTTVEIDPQLKALAEQNLS 120
           LAPK+EARILQEANVKKHE VLEIGAGSGYMAALLA KARHVTTVEI P+LKALAE+NLS
Sbjct: 61  LAPKIEARILQEANVKKHEYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAERNLS 120

Query: 121 GYGVVNVSVELGNGAQGWQG------EYDVIVISGALPFLPDAFLKQIKVGGRILAIIGE 174
            YGV NV V+LGNGAQGW G      EYDVIVISG+LP LP+AF KQ+K+GGR+LAI+G 
Sbjct: 121 DYGVANVDVQLGNGAQGWVGADGKAAEYDVIVISGSLPVLPEAFGKQLKIGGRLLAIVGS 180

Query: 175 APVMSLQVITRTSDQVYDTVNVFELMAKPLHAASEHSHFTF 215
            PVM LQ+ITRTS+  ++TVNV E +AKPLHAA   SHFTF
Sbjct: 181 LPVMELQLITRTSEHAFETVNVVETLAKPLHAALTPSHFTF 221


>gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate
           carboxylmethyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 321

 Score = 79.0 bits (193), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 25  VLDLLTVVRREEFVPAAHRSLAFFDTEIPLPGGENMLAPKVEARILQEANVKKH----EQ 80
           VL  L  V R  FV     S A+ D  +P+   + +  P + AR+++     +H    ++
Sbjct: 132 VLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIEIMRQNRHGGRLDR 191

Query: 81  VLEIGAGSGYMAALLASKARHVTTVEIDPQLKALAEQNLSGYGVVNVSVELGNGAQGWQ- 139
           VLEIG G GY AA+L+  A  V ++E    L  LA+ NL    V N+ +  G+G  G   
Sbjct: 192 VLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRLHYGDGMLGLPQ 251

Query: 140 -GEYDVIVISGALPFLPDAFLKQIKVGGRILAIIGE 174
              +D I+++ A   +P A L+Q+ VGGR++A +GE
Sbjct: 252 VAPFDGIILAAAGLEVPQALLEQLAVGGRLVAPVGE 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 663,022
Number of extensions: 27040
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)