BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0193.p
         (435 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprot...    59   7e-10
gi|300309818|ref|YP_003773910.1| drug efflux lipoprotein [Herbas...    59   1e-09

>gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 182/414 (43%), Gaps = 28/414 (6%)

Query: 23  AADLVQVYQQALGNDPIYQSARYALRAGEEKITQGRAAILPTVGVGGSYTRS-----GDT 77
           A  L     QAL   P  Q+A  A++    ++ + RA  LPTV  G S   S     G +
Sbjct: 71  ALSLADAIDQALCQQPQIQAAWAAIKLQAAQLGEARAGYLPTVTSGASKLNSATQYEGGS 130

Query: 78  MQNSSNTYTLQLTQPLLRWANWETYQQGKLSVAVSE-AQFAQAQQDLILRVGQAYFDVL- 135
            + S  T    LT  LL +      Q+   ++  S  A    A Q  +  V  +Y++V  
Sbjct: 131 GRRSLTTLYATLTWRLLDFGGRSANQRAADAMLQSALASHDAAVQKALASVVASYYEVQS 190

Query: 136 --AAQDALGFLRAQRIAISEQLASAKRNFEVGTATITDTNEAQ---ARYDL----AGAQE 186
             A+Q A    ++Q++A  + L +A R  + G  ++ +T +A+   A+ +L    A  Q 
Sbjct: 191 SSASQQARE--KSQQLA-RQLLETAIRREQRGVGSLPETLQARTFLAKAELEQARASGQH 247

Query: 187 IAAQNDLEVALSKLQQIIGQPPTPLSALRPNVQLSLPQPAMIDPWIASAEQQNYSVVAQQ 246
             AQ  L  A+  L++    P   L   +      L Q   +  W+ +A Q + +++A +
Sbjct: 248 KKAQAMLAAAMGLLREAQDVPVLTLVPEQEEYPDGLEQN--LPAWLQAARQYHPAILAAR 305

Query: 247 VSLEIAQSEIRRNRAGHTPTVDLVAGRNYINQNSQLTPYTNG-RG-YANSIGVQWNIPLF 304
             LE A+ +++  R+   PT+DL A R Y N      P   G RG     +G+   +P+F
Sbjct: 306 AQLEAAREKLQVARSEGMPTLDLSA-RQYANGR----PNQAGNRGDRERMVGLNLTVPIF 360

Query: 305 SGFSVSSKVDESIALADKARSDLENARRTAVLNARQAYLGVSNGLSQVKAYEAAEVSSLS 364
            GF+   KV  + A  +   ++L+  +   + +    Y      L+ + +      ++  
Sbjct: 361 EGFARDYKVGGAQAQIEAREAELQEVQTQVLGDIASTYAEAMTALNSLSSSRRLLDAAQG 420

Query: 365 ALESNRLGYQVGVRINIDVLNAQQQLFSTRRDLARARYDTLMNGLKLKSAAGSL 418
           A++S R  Y  G    +++LNAQ  L    ++  +A  D     L+L + AG +
Sbjct: 421 AVDSVRRKYDAGAADIVEMLNAQTALSEADQERVKAMSDWRSARLRLLANAGRM 474


>gi|300309818|ref|YP_003773910.1| drug efflux lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 483

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 178/421 (42%), Gaps = 43/421 (10%)

Query: 26  LVQVYQQALGNDPIYQSARYALRAGEEKITQGRAAILPTVGVGGSYTRSGDTMQNS---- 81
           L Q+   AL N+   ++A   +     +    RA +LP + + G+  R+      S    
Sbjct: 71  LQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAARTRTAASQSLTGQ 130

Query: 82  ---SNTYTLQLTQP---LLRWANWETYQQGKLS--VAVSEAQFAQAQQDLILRVGQAYFD 133
              SN+Y + L  P   L  +      +   L+  ++  EAQ   AQ  L+ +V QAY  
Sbjct: 131 PTISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQ-KSAQISLVAQVAQAYLA 189

Query: 134 VLAAQDALGFLRAQRIAISEQLASAKRNFEVGTATITDTNEAQARYDLAGA-------QE 186
             +  + L        +    L  A++  +VG +T  D    Q   + A         Q 
Sbjct: 190 ERSYAEQLKLADETLKSRQSNLDLAQKRLDVGASTALDFRLTQTLVESARVAKTQLERQR 249

Query: 187 IAAQNDLEVALSKLQQIIGQ-PPTPL---SALRPNVQLSLPQPAMID-PWIASAEQQNYS 241
             A+N L + + K    IG+ PP  L     +  ++   LP   + + P I SAEQ    
Sbjct: 250 AQAENALTLLVGK---KIGELPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQ---- 302

Query: 242 VVAQQVSLEIAQSEIRRNRAGHTPTVDLVAGRNYINQNSQLTP-YTNGRGYANSIGVQWN 300
                 SL  A + I   RA   P + L    N+ + +S L   + +G G A S G   +
Sbjct: 303 ------SLLAANANIGAARAAFFPRISLTG--NFGSASSTLGGLFESGSG-AWSFGPSLS 353

Query: 301 IPLFSGFSVSSKVDESIALADKARSDLENARRTAVLNARQAYLGVSNGLSQVKAYEAAEV 360
           +P+F     S+ +D +    +KA    E A +TA      A +   +   QVKA EA   
Sbjct: 354 LPIFDFGRNSANLDLAEVRKNKAVVTYEKAIQTAFREVADALVARGSLDEQVKAQEAFLA 413

Query: 361 SSLSALESNRLGYQVGVRINIDVLNAQQQLFSTRRDLARARYDTLMNGLKL-KSAAGSLK 419
           +    L+   L ++ G+  ++D L+AQ+ LFS ++ L +AR   L N + L K+  G L 
Sbjct: 414 AQQERLKLTDLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLN 473

Query: 420 E 420
           E
Sbjct: 474 E 474


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,157,311
Number of extensions: 44944
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 10
Length of query: 435
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,203,190
Effective search space: 417506930
Effective search space used: 417506930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)