BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0190.p (1050 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1978 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1165 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 1159 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1139 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 689 0.0 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1978 bits (5124), Expect = 0.0, Method: Compositional matrix adjust. Identities = 971/1040 (93%), Positives = 1004/1040 (96%) Query: 1 MGKFFIDRPVFAWVLAIFIILAGALAITGLPVSQYPSIAPPTIVVTATYPGATAQTLDDS 60 MGKFFIDRPVFAWVLAIFI+LAGALAITGLPVSQYP+IAPPTIVVTATYPGATAQTLDDS Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VTSLIEQEMNGADGLQYMESQSQANGQVQITVTFSPDTNADLAAVDVQNRLKRVEARLPA 120 VTSLIEQEMNGADGLQY+ESQSQANGQVQIT+TFSP+TN DLAAVDVQNRLKRVEARLPA Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEVKRVPGVGQAQLFGT 180 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNE+KRVPGVGQAQLFGT Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAITAQNALVAGGTLGALPSPTSQQISATVVVNGQL 240 ERAMRIWIDPNKLIGLNLTPADVTAAI AQNALVAGGTLGALPSP +QQI+ATVVVNGQL Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 TSPEQFGNIVLRANADGSSVRMRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 TSPEQFGNI+LRANA+G++VR+RDVAR+EVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 GTATAVHKKMEELARYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 GTATAVHKKMEELA+YFP GVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NIRYTIIPTIVVPVALMGTFATLFVFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 NIRYTIIPTIVVPVAL+GTFATL +FGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 SEEGLSPKEATRKAMGQITGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLAMVASMVF 480 SEEGLSP +ATRKAMGQI+GALIGITLVLIAVFIPMAFFGGAVGAIYRQFSL+MVASMVF Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SVLMAFTLTPALCATILLPVEKGHHHEKSGFFGWFNRRFNKTASGYQGFIGKMLTKTGRY 540 SVLMAFTLTPALCATIL PVEKGHHHEK GFFGWFNR+FN TASGYQG IG ML K GRY Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 541 MIVYALIVGCVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTGRTLEVIKTIENYYLKQ 600 MIVY LIV CVGLLYVRLPASFLPNEDQGYIITNVQLPPGAST RT V+K IE YYLK Sbjct: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 Query: 601 PAVEHVVAIAGFSFSGNGQNAGLVFTPLKDWSERDKTQSADAVAGRAFGAFSQIKDAIVF 660 PAVEH +A+ G+SFSGNGQNA LVFTPLKDWS+RDK+QSADA+AG+AFGAFSQIKDAIVF Sbjct: 601 PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVF 660 Query: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 PLNPPPIPELGNATGFTFRLQDRAGLGH ALVQARNQILGMASQSKVLAGVRPEGLEDAP Sbjct: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 Query: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADAKRRLQPED 780 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPN GRQQRVIVQADAKRRLQPED Sbjct: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED 780 Query: 781 LAGLYARNSGGTMVPFSAFTTSKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGDAMTEME 840 L LYARNS GTMVPFSAF T+KWINGPVQLIRYNGYPAMKIAGGAAPGRSTG+AM EME Sbjct: 781 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 840 Query: 841 SFVAKLPPGFGFEWTGQSLEEKTSGSQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 SFVAKLPPGFGFEWTGQSLEEKTSG+QAPALYALSLIAVFLVLAALYESTSIPLAVMLVV Sbjct: 841 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 Query: 901 PLGILGALLGVTLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIEATLE 960 PLGILGALLGVTLR MPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQG GLIEATLE Sbjct: 901 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE 960 Query: 961 AVHLRFRPIIMTSLAFILGVLPLVIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 AVHLRFRPIIMTSLAFILGVLPL IASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF Sbjct: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 Query: 1021 VVVRKIFKGSERQRQLDAAH 1040 VVVRKIFKGSERQR+ DA H Sbjct: 1021 VVVRKIFKGSERQRKFDAEH 1040 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1165 bits (3015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 583/1023 (56%), Positives = 758/1023 (74%), Gaps = 2/1023 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIILAGALAITGLPVSQYPSIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWV+A+FI+L G +A++ LP+++YPS+APPT+ + ATYPGAT QT++D Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VTSLIEQEMNGADGLQYMESQSQANGQVQITVTFSPDTNADLAAVDVQNRLKRVEARLPA 120 V SLIE+E++G L Y ES + +G QI+VTF P T+ +LA VDVQN+LK +EARLP Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEVKRVPGVGQAQLFGT 180 V Q GV V + S+FLL + L+S DG+ D V L DYL+RN++ E++R+ GVG+ QLFG Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAITAQNALVAGGTLGALPSPTSQQISATVVVNGQL 240 E+AMRIW+DP KL LT D++ AI+ QNA +A G LG P+ QQI+ + V GQL Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 TSPEQFGNIVLRANADGSSVRMRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 SP QF IVL+A ADGS V + DVAR+E+G QSY + R +GKP+ VQLSP ANA+ Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 GTATAVHKKMEELARYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 TA A+ +MEEL P G+ +++PY+T+ FVKISI++VV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALMGTFATLFVFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 N+RYT+IP IV P+AL+GT A + + G+S+NVLTMFGMVLAIGI+VDDAIVVVENVERIM Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 SEEGLSPKEATRKAMGQITGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLAMVASMVF 480 + EGL P+EAT KAMG+ITGA+IGITLVL AVFIPMA GG+VG IYRQFS+AM S++F Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SVLMAFTLTPALCATILLPVEKGHHHEKSGFFGWFNRRFNKTASGYQGFIGKMLTKTGRY 540 S +A +LTPALCAT+L PV G HH+K GFFG FNR FN+ + Y+ +G+++ + R Sbjct: 481 SAFLALSLTPALCATLLRPVPAG-HHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRM 539 Query: 541 MIVYALIVGCVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTGRTLEVIKTIENYYLKQ 600 M+VYA + G + + LP++FLP EDQGY +T+ QLP A+T RT + E Y + Sbjct: 540 MLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGR 599 Query: 601 PAVEHVVAIAGFSFSGNGQNAGLVFTPLKDWSERDKTQSADAVAGRAFGAFSQIKDAIVF 660 + +++ GF FSG+G NA + FT LKDW ER + SA S + D +V Sbjct: 600 EDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGV-DGMVM 658 Query: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 L PP I ELGN++GF RLQDRA G+AAL A Q+L +A++S+ L+GV +GL Sbjct: 659 SLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPAGA 718 Query: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADAKRRLQPED 780 +QL+IDR KA ALGV FS+I+ LS A+GS YVNDFPN GR Q+VI+QA A R+Q ED Sbjct: 719 SVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLED 778 Query: 781 LAGLYARNSGGTMVPFSAFTTSKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGDAMTEME 840 + LY RN G MVP + + W P QL RY G+PA++I+G AAPG ++G+AM EME Sbjct: 779 VMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEME 838 Query: 841 SFVAKLPPGFGFEWTGQSLEEKTSGSQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 +LPPGF WTGQSL+E+ S +QAP L ALS++ VFLVLAALYES SIPL+VMLVV Sbjct: 839 RLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVV 898 Query: 901 PLGILGALLGVTLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIEATLE 960 PLG++GA+ V LR MPNDV+FKVGMI V+GLSAKNAILI+EFA+ L+++GMGL+EA ++ Sbjct: 899 PLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEAAIK 958 Query: 961 AVHLRFRPIIMTSLAFILGVLPLVIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 A LR RPI+MTSLAF LGV+PL++ASGA + +QRAIGTGV GGM++ATVLAV VP+FF Sbjct: 959 ASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFF 1018 Query: 1021 VVV 1023 V+V Sbjct: 1019 VLV 1021 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/1031 (56%), Positives = 759/1031 (73%), Gaps = 4/1031 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIILAGALAITGLPVSQYPSIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWVLAI ++LAG +++ LP++QYP+IAPP I +TA YPGA+A+TL+D+ Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VTSLIEQEMNGADGLQYMESQSQANGQVQITVTFSPDTNADLAAVDVQNRLKRVEARLPA 120 VT +IEQ+M G D L YM S S+++G V IT+TF TN D A V VQN+L LP+ Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEVKRVPGVGQAQLFGT 180 V QQG+ VTKS +NFL + +S DG + L DY++ NV + + RV GVG LFG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAITAQNALVAGGTLGALPSPTSQQISATVVVNGQL 240 + AMRIW+DPNKL LTP DV AI AQNA V+ G LG LP+ +QQI+AT+ +L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 TSPEQFGNIVLRANADGSSVRMRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 + +QF NIVLR G+ V++RDVARIE+G +SY + GR +GKP++ + ++L+ ANAL Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 GTATAVHKKMEELARYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 T A+ K++ EL ++FP G+K PYDT+ FV+ISIEEVV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALMGTFATLFVFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 N R T+IPTI VPV L+GTF L VFGF+IN LTMF MVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLSPKEATRKAMGQITGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLAMVASMVF 480 SEEGL PK+ATRK+MGQI+GAL+G+ LVL AVF+PMAFF G+ G IYRQFS+ +V++M Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SVLMAFTLTPALCATILLPVEKGHHHEKSGFFGWFNRRFNKTASGYQGFIGKMLTKTGRY 540 SVL+A LTPALCAT+L P KGH +GFFGWFNR+F+++ YQG + ML + RY Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 541 MIVYALIVGCVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTGRTLEVIKTIENYYL-- 598 M YA+++ V +++LP FLP+EDQG + +QLP GA+ RT EVI+ +E ++L Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 599 KQPAVEHVVAIAGFSFSGNGQNAGLVFTPLKDWSERDKTQ-SADAVAGRAFGAFSQIKDA 657 ++ AV V A++GFSF+G+GQN G F LK W ER S VA +A AF+ I+DA Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 658 IVFPLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMASQSKVLAGVRPEGLE 717 VF PP + ELGNATGF L+D A LGHAAL+QARNQ+LG Q K L VRP GLE Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADAKRRLQ 777 D P+ +L +D DKA ALGV S IN ++TA GSSYVNDF ++GR ++V++Q DA+ R+ Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 778 PEDLAGLYARNSGGTMVPFSAFTTSKWINGPVQLIRYNGYPAMKIAGGAAPG-RSTGDAM 836 P D+ Y RNS GTMVPFSAF+T+ W +G +L RYNG P+M+I G A PG S+G+AM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 837 TEMESFVAKLPPGFGFEWTGQSLEEKTSGSQAPALYALSLIAVFLVLAALYESTSIPLAV 896 +E+ +AK+PPG G+EWTG SL+EK S + LY +S++ VFL LAALYES ++P +V Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 897 MLVVPLGILGALLGVTLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIE 956 +LVVPLG+ GALLG L NDVYF+VG++ +GL+ KNAILI+EFAKDL G L+E Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLVIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 AT+EAV +R RPI+MTSLAFILGVLP+V+ SGAG+ +Q A+GT V+GGM++ TVLAVF V Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1017 PIFFVVVRKIF 1027 P+FFV++ +F Sbjct: 1021 PLFFVIIMTLF 1031 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1139 bits (2946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/1052 (53%), Positives = 760/1052 (72%), Gaps = 9/1052 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIILAGALAITGLPVSQYPSIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWV+AI I+L G ++I L + QYP IAPP + + ATY GA+A+TL+DS Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VTSLIEQEMNGADGLQYMESQSQANGQVQITVTFSPDTNADLAAVDVQNRLKRVEARLPA 120 VT +IEQ+M G D LQYM + S + G +++TF+ TN D+A + VQN+L++V ARLP Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEVKRVPGVGQAQLFGT 180 AV GV VTK+ ++ L+ + L+S D ++ + +GD++S + +++ RV GVG FGT Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAITAQNALVAGGTLGALPSPTSQQISATVVVNGQL 240 AMRIWIDP KL L P+D+T+A+ AQN V+ G +GALP+ QQI+AT+ +L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 TSPEQFGNIVLRANADGSSVRMRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 T+P++F NI+++++ DGS V++ DVAR+E+GG+SY + + +GKPSS + +QL+ ANAL Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 GTATAVHKKMEELARYFPAGVKY--TIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLF 358 TA AV KK+ EL YFPA +K I YDT+ FV++S+EEVVKTLIEAIVLV L+M+LF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNIRYTIIPTIVVPVALMGTFATLFVFGFSINVLTMFGMVLAIGILVDDAIVVVENVER 418 LQNIR T IP I VPV L+GTF L +FG+SIN LTMFGMVLAIG+LVDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 IMSEEGLSPKEATRKAMGQITGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLAMVASM 478 +MSEE LSPKEATRK+M +ITGAL+GI +VL AVFIPMAFFGG+ G IYRQFS+ +V++M Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 VFSVLMAFTLTPALCATILLPVEKGHHHEKSGFFGWFNRRFNKTASGYQGFIGKMLTKTG 538 SV++A TLTPALCAT+L P G H ++ FF WFNR F+++A+ YQG + +L + Sbjct: 481 ALSVMVALTLTPALCATLLKP-HAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGK 539 Query: 539 RYMIVYALIVGCVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTGRTLEVIKTIENYYL 598 R +++YALI + +L++RLP SFLP EDQG ++ +QLP GA+ +T V+KT++ Y++ Sbjct: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 Query: 599 KQP-AVEHVVAIAGFSFSGNGQNAGLVFTPLKDWSERDKT-QSADAVAGRAFGAFSQIKD 656 +P +VE V+AI G GN QN F LKDW +R QSA + RA S+I+ Sbjct: 600 NKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRG 659 Query: 657 AIVFPLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILGMASQSKVLAGVRPEGL 716 A VF +NPP + LG ++GF L+D G+GH AL+QAR+Q L +A + +LA VR GL Sbjct: 660 ARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGL 719 Query: 717 EDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQGRQQRVIVQADAKRRL 776 +D PQL++ ID KA+AL + S IN+ L+TA+G +YVNDF + GR ++V VQ D+ R+ Sbjct: 720 DDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRM 779 Query: 777 QPEDLAGLYARNSGGTMVPFSAFTTSKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGDAM 836 Q +DL Y RN+ MVPF+AF +S+W GP L RYNG + +I G A G S+G AM Sbjct: 780 QADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAM 839 Query: 837 TEMESFVAKLPPGFGFEWTGQSLEEKTSGSQAPALYALSLIAVFLVLAALYESTSIPLAV 896 E+E VA+LP G GFEWTG S +E+ SG+QAP LYA+S++ VFL LAALYES S+P AV Sbjct: 840 AEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAV 899 Query: 897 MLVVPLGILGALLGVTLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIE 956 +L VPLGI+G +L + GM NDVYF+VG++ VGLSAKNAILI+EFAK L G L E Sbjct: 900 ILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWE 959 Query: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLVIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 ATLEAV LR RPI+MTSLAF+ GVLPL +ASGAGSAS+RAIGTGV+GGM++AT+L +F V Sbjct: 960 ATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFV 1019 Query: 1017 PIFFVVVRKIF--KGSERQRQLDAAHHKIDVE 1046 P+F+ ++ + + + RQ D H + E Sbjct: 1020 PLFYYLIGAWLDRRAARKPRQDD--DHAMQKE 1049 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1063 (40%), Positives = 646/1063 (60%), Gaps = 35/1063 (3%) Query: 1 MGKFFIDRPVFAWVLAIFIILAGALAITGLPVSQYPSIAPPTIVVTATYPGATAQTLDDS 60 + KFFIDRP+FA VL++ ++L G LA+ LP+S+YP + PP++VV A YPGA + + ++ Sbjct: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 Query: 61 VTSLIEQEMNGADGLQYMESQSQANGQVQITVTFSPDTNADLAAVDVQNRLKRVEARLPA 120 V S +E+++NG + + YM+SQ+ ++G + ITV F + D A VQNR+ + RLP Sbjct: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEVKRVPGVGQAQLFGT 180 V + GV KS + + L+S D + D L +Y NV + + R+ GVG+ LFG+ Sbjct: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 Query: 181 -ERAMRIWIDPNKLIGLNLTPADVTAAITAQNALVAGGTLGALPSPTSQQISATVVVNGQ 239 AMR+W+DPNK+ LT DV AI QN VA G +GA PS + +V G+ Sbjct: 183 GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 Query: 240 LTSPEQFGNIVLRANADGSSVRMRDVARIEVGGQSYDTSGRLDGKPSSFIGVQLSPTANA 299 L + +F +I+L+A+ DG++ R+ DVAR+E+ Y LD KP+ I + +P ANA Sbjct: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 Query: 300 LGTATAVHKKMEELARYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFL 359 L +T V M+EL+ FP+ V Y+I YD ++FV+ SIE VV TL+EAI LV +V+ +FL Sbjct: 303 LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362 Query: 360 QNIRYTIIPTIVVPVALMGTFATLFVFGFSINVLTMFGMVLAIGILVDDAIVVVENVERI 419 Q R +IIP + VPV+++GTF+ + FG++IN L++FGMVLAIGI+VDDAIVVVENVER Sbjct: 363 QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422 Query: 420 MSEEGLSPKEATRKAMGQITGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLAMVASMV 479 + GLSP++AT +AM +++G +I I L L+AVF+P+AF G G Y+QF++ + S V Sbjct: 423 IG-AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481 Query: 480 FSVLMAFTLTPALCATILLPVEKGHHHEKSGFFGWFNRRFNKTASG-------------- 525 S AF + L + + KGH + W R+ ++ G Sbjct: 482 IS---AFN-SLTLSPALAALLLKGHGDKPD----WLTRQMDRFLGGFFIRFNRFFNRASD 533 Query: 526 -YQGFIGKMLTKTGRYMIVYALIVGC-VGLLYVRLPASFLPNEDQGYIITNVQLPPGAST 583 Y + ++ + G M VY L++ +G+ Y+ +P F+P +D+ Y++ QLP GAS Sbjct: 534 NYGHGVTGVIKRKGATMGVYVLLLAATLGISYI-VPGGFVPGQDKQYLVAFAQLPNGASI 592 Query: 584 GRTLEVIKTIENYYLKQPAVEHVVAIAGFSFSG--NGQNAGLVFTPLKDWSER-DKTQSA 640 R+ EV++ + + LK+P V +A G S +G N +AG+VF LK + ER K S Sbjct: 593 DRSEEVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSG 652 Query: 641 DAVAGRAFGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQILG 700 +A+A F IK+A PPP+ LG GF +++DR LG+A L +A + Sbjct: 653 NAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMK 712 Query: 701 MASQSKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNQ 760 A++ L + + PQL +++DR KA LG+P + + + + LGS YVNDF Sbjct: 713 AAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRF 772 Query: 761 GRQQRVIVQADAKRRLQPEDLAGLYARNSGGTMVPFSAFTTSKWINGPVQLIRYNGYPAM 820 GR +V QADA R + ED+A L RN G MVP S+ K GP ++RYNGY A Sbjct: 773 GRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAA 832 Query: 821 KIAGGAAPGRSTGD-AMTEMESFVAKLPPGFGFEWTGQSLEEKTSGSQAPALYALSLIAV 879 I GG APG S+ A LP G FEWT + ++ +G+ ++ +S++ V Sbjct: 833 DINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLV 892 Query: 880 FLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRGMPNDVYFKVGMIAVVGLSAKNAIL 939 FLVLAALYES ++PLAV+L+VP+ IL AL GV L N+++ ++G++ +VGLSAKNAIL Sbjct: 893 FLVLAALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAIL 952 Query: 940 IIEFAKDLQAQGMGLIEATLEAVHLRFRPIIMTSLAFILGVLPLVIASGAGSASQRAIGT 999 I+EFA++L+ QG ++A +EA LR RPI+MTS+AFI+GV+PLV +SGAGS + A+G Sbjct: 953 IVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGI 1012 Query: 1000 GVMGGMITATVLAVFLVPIFFVVVRKIFKGSERQRQLDAAHHK 1042 V GM+ T+ +FL P+F+V++R I +R+ A+HH+ Sbjct: 1013 AVFFGMLGVTLFGLFLTPVFYVLLRTI----DRRALHSASHHE 1051 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,238,134 Number of extensions: 141508 Number of successful extensions: 672 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 580 Number of HSP's successfully gapped: 17 Length of query: 1050 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 955 Effective length of database: 1,170,045 Effective search space: 1117392975 Effective search space used: 1117392975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)