BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0186.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309816|ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-aci...   537   e-154

>gi|300309816|ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-acid
           (KDO) transferase [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  537 bits (1384), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/422 (66%), Positives = 323/422 (76%), Gaps = 1/422 (0%)

Query: 1   MRLLYSALWWVGLPFVLLRLWRRGRKEPGYRQHIGERLGFYDQFRQRALSPLIWVHAVSV 60
           MR LYSALWW  +P VLLRLWRRGR+EPGYR H+ ERLGFY +      +  IWVHAVSV
Sbjct: 1   MRWLYSALWWFAMPLVLLRLWRRGRQEPGYRAHVAERLGFYPRLPD-PQARFIWVHAVSV 59

Query: 61  GETRAAQPLIEALLQTYPQHTILLTHMTATGRATGQQLFAAHGERVIQSYFPYDTGWMCA 120
           GETRAA+PL++ALL  YP   ILLT MTATGRATG Q+F  HG RV+QS+ PYDTGWMC+
Sbjct: 60  GETRAAEPLVDALLSRYPDCKILLTCMTATGRATGAQVFGKHGARVVQSFLPYDTGWMCS 119

Query: 121 RFLRYFKPRICILMETEVWPNMVRQCVRAGVPVMLANARLSARSLRRGQRFGAILLEAAA 180
           RFLR+F+P  CILMETEVWPN++RQC R  VPVMLANARLS RSLRRGQRF ++L  AA 
Sbjct: 120 RFLRHFRPLACILMETEVWPNLIRQCRRHDVPVMLANARLSERSLRRGQRFASLLRPAAE 179

Query: 181 GIDCVAAQSEQDAERLRLFGARQVHVTGSIKFDVEAPAEMVALGRQWRAQFGERPVLLCA 240
            ID V AQS+ DA RL  FGAR V VTGS+KFDV+ P ++V  GR+W+   GER VLLCA
Sbjct: 180 AIDVVGAQSDGDARRLLAFGARHVEVTGSLKFDVQPPMQVVERGREWKRALGERKVLLCA 239

Query: 241 STREGEEALILDALRGVANRDFLTVIVPRHPQRFDEVAALATTRGFATQRRSSLGTASVA 300
           STREGEE LILDAL  +   D+LTVIVPRHPQRFDEVAAL   RG   +RRS L      
Sbjct: 240 STREGEEVLILDALAKLGRPDWLTVIVPRHPQRFDEVAALIRARGLRLRRRSELAQDFAV 299

Query: 301 RAVDVVLGDSMGEMFAYYAACDVAFIGGSLLPLGGQNLIEACVLGKPVMIGAHTFNFQVI 360
             VDVVLGDSMGEMFAYYA  DV+FIGGSLLPLGGQNLIEA  LGKPV+IG HTFNF  I
Sbjct: 300 EDVDVVLGDSMGEMFAYYALSDVSFIGGSLLPLGGQNLIEALALGKPVLIGEHTFNFLRI 359

Query: 361 SEQAVAAGAAVRIADADDLLRAAVKLLAQAEPRETMSGHAAAFARRHRGATQRTLGLVEG 420
           +E+AVA GAAVR+ DA +LLR    L+A+ +  + M+  A +FA+RH+GAT R+L L+  
Sbjct: 360 TEEAVADGAAVRVGDAVELLRQWSILIAEPDRIDEMAQAALSFAQRHQGATDRSLVLLAP 419

Query: 421 LL 422
           LL
Sbjct: 420 LL 421


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,205,748
Number of extensions: 48071
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)