BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0183.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309814|ref|YP_003773906.1| ADP-heptose:LPS heptosyltransfe...   409   e-115

>gi|300309814|ref|YP_003773906.1| ADP-heptose:LPS
           heptosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 241/306 (78%), Gaps = 1/306 (0%)

Query: 1   VHNMPMVADIRRHYPDANIDWVVEEAYTSLVRLNPHVRRIIPIALRRWRKSLGSAATRAE 60
           VHNMPMVADI RH+PDA IDWVVEEAYT LV LNPHVR IIPIALRRWRKSL SAATRAE
Sbjct: 15  VHNMPMVADIHRHFPDAQIDWVVEEAYTGLVGLNPHVRNIIPIALRRWRKSLWSAATRAE 74

Query: 61  IAGFYRQLRNEAYDIVFDTQGLLKTSVVMRLARLAPGGKRVGLANATEGSGYEPLSRIFH 120
           I  F RQLR E YD+VFDTQGLLKTSVVMR+ARL+  G+R+GLANATEGSGYEP+SRIFH
Sbjct: 75  IGAFRRQLRGERYDLVFDTQGLLKTSVVMRMARLSGDGRRIGLANATEGSGYEPISRIFH 134

Query: 121 TQSVPVGLHTHAVLRARTVAAVALDYSSDDTADFGLGAPPPAELPDWLPQHPYALFFHGT 180
            QS+ V   THAV RAR VAA AL Y  D   DF L   P    P W+P+  Y +FFHGT
Sbjct: 135 DQSIAVDRRTHAVTRARLVAAGALGYQLDPRPDFALQPAPQQRWP-WMPEQDYVVFFHGT 193

Query: 181 ARAAKQWSPENWVAVAQALHARNLPVLLPWGNLKEKQAAERLAALMPQATVLPALSLMEA 240
           ARAAKQW    W+ + QAL AR LP+LLPWG+ +E+QAA++LA  +  ATVLPAL LM+A
Sbjct: 194 ARAAKQWPQAQWIRLGQALAARGLPILLPWGSQREQQAAQQLAQAIAGATVLPALPLMQA 253

Query: 241 VTLVRRATLVVGLDTGLTHIAAAYCRPTVELYCDSPRWKTEGNWSPFIANLGDIGQAPDV 300
           V LV++A LVVGLDTGLTHIAAA  +PT+ELYCDSPRWKTEGNWSP I NLGD+G  P  
Sbjct: 254 VALVQQARLVVGLDTGLTHIAAACGKPTIELYCDSPRWKTEGNWSPSIINLGDLGSPPSE 313

Query: 301 AQVLLA 306
            +VL A
Sbjct: 314 DEVLQA 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,044,496
Number of extensions: 43000
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)