BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0181.p
         (406 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...   518   e-148
gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...    92   1e-19

>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score =  518 bits (1335), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 242/290 (83%), Positives = 267/290 (92%)

Query: 1   MTTIAPSIFKAYDIRGIVGQTLNAEVAKQIGQAFGSAALAKGQTSVVIGRDGRLSGPELT 60
           MT+++PSIFKAYDIRGI+G+TL+  VA +IGQAFG+AALAKGQ  VVIGRDGRLSGPEL 
Sbjct: 1   MTSLSPSIFKAYDIRGIIGKTLDGTVAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELA 60

Query: 61  AALATGLQSAGIDVIDLGVVATPMVYFGTHVLGTQSGVMVTGSHNPPDYNGFKMVLAGEA 120
           A LA GLQ+ G+DVIDLG+VATPMVYFGTHVL TQSG+MVTGSHNPPDYNGFKMVLAGEA
Sbjct: 61  AELARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEA 120

Query: 121 IHGETIQALYHAIVENEFASGTGAYRTHDIRKQYIDRIVGDAKLARPMKIAVDCGNGVAG 180
           IHGETIQALYHAIV+ +F  G G Y THDI+  YI+R++ D KLARP+KIAVDCGNGVAG
Sbjct: 121 IHGETIQALYHAIVKGDFPQGAGGYATHDIKAAYIERMLADVKLARPLKIAVDCGNGVAG 180

Query: 181 AFAGELYRALGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLQETDNEIGLAFDGDG 240
           AFAGE+YR LGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCL+ETD E+GLAFDGDG
Sbjct: 181 AFAGEIYRTLGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLRETDCELGLAFDGDG 240

Query: 241 DRLGVVTKDGQIIYPDRQLMLFAADVLTRHPGREILYDVKCTRHLAPWIS 290
           DRLG+VTKDGQIIYPDRQLMLFA DVLTRHPG+EILYDVKCTRHLAPWI+
Sbjct: 241 DRLGLVTKDGQIIYPDRQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWIT 290


>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 18/282 (6%)

Query: 4   IAPSIFKAYDIRGIVGQT-LNAEVAKQIGQAFGSAALAKGQT-----SVVIGRDGRLSGP 57
           +A   F    +RG VG   +  +   ++G A G   LAK +      +V+IG+D R+SG 
Sbjct: 1   MAAKYFGTDGVRGRVGVAPITPDFVMRLGYAAGKV-LAKAKDGMTRPTVLIGKDTRISGY 59

Query: 58  ELTAALATGLQSAGIDVIDLGVVATPMVYFGTHVLGTQSGVMVTGSHNPPDYNGFKMVLA 117
            L AAL  G  +AG+DV   G + TP V + T  L   +GV+++ SHNP   NG K   A
Sbjct: 60  MLEAALEAGFAAAGVDVWLAGPLPTPAVAYLTRALRLSAGVVISASHNPYHDNGIKFFSA 119

Query: 118 GEAIHGETIQALYHAIVENEF----ASGTG-AYRTHDIRKQYID---RIVGDAKLARPMK 169
                 ++++A   A +E       +   G A R  D   +YI+       +A   R M+
Sbjct: 120 SGNKLPDSVEADIEAALEQPMDCVPSEKLGKARRLSDAPGRYIEFCKSTFPNAMNLRGMR 179

Query: 170 IAVDCGNGVAGAFAGELYRALGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLQETD 229
           + VDC +G A   A  ++  LG EV  +  + DG   N       P+    L+  ++E  
Sbjct: 180 LVVDCAHGAAYNIAPHVFHELGAEVITIGNQPDGLNINEDCGATAPKT---LVASVREYR 236

Query: 230 NEIGLAFDGDGDRLGVVTKDGQIIYPDRQLMLFAADVLTRHP 271
            ++G+A DGD DRL +V  +G+I   D  L L   D L   P
Sbjct: 237 ADLGIALDGDADRLIMVDGEGRIYNGDELLYLMVKDRLATGP 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,313,718
Number of extensions: 57429
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,207,925
Effective search space: 385328075
Effective search space used: 385328075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)