BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0177.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine 2-epime...   562   e-161
gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine 2-epime...   166   3e-42

>gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  562 bits (1448), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 260/359 (72%), Positives = 307/359 (85%)

Query: 1   MSRVIAECDRQFNHVLVHSGQNYDYELNQIFFNDLEIRQPDFFLEAAGETAAKTIAAVIE 60
           MSRVIAE D+   H+LVH+GQNYDYELNQ+FF DL IR+PD FLEA G  AA+TIA VIE
Sbjct: 17  MSRVIAELDQHTQHILVHTGQNYDYELNQLFFEDLAIRKPDHFLEAVGVNAAQTIARVIE 76

Query: 61  KSDALFAQEKPDALLLYGDTNTCLAVISAKRRKIPVFHMEAGNRCFDQRVPEELNRKVLD 120
           KSD +  +EKPDA+LLYGDTN+CLAVISAKRRKIPVFHMEAGNRCFDQRVPEELNRKVLD
Sbjct: 77  KSDEVMEKEKPDAVLLYGDTNSCLAVISAKRRKIPVFHMEAGNRCFDQRVPEELNRKVLD 136

Query: 121 HLSDINMVLTEHARRYLIGEGIKPETIIKTGSHMREVIDHYRPKIENSDVLSRLNFEPGK 180
           HLSDIN+VLTEHARRYLI EG++PETIIKTGSHMREV+DHY PKI++SD+LSR+  E G+
Sbjct: 137 HLSDINLVLTEHARRYLIAEGVRPETIIKTGSHMREVLDHYMPKIQSSDILSRMGLEQGR 196

Query: 181 FFVVSAHREENVDSPEAIKDLLETLQALVRKYGLPIFVSTHPRTRKRLEEIGYEELDSRI 240
           +F+VSAHREENVD+PE + D++ETL AL ++Y +P+ VSTHPRT+KRL+ +    LDSRI
Sbjct: 197 YFIVSAHREENVDTPENLIDMVETLNALAQQYQVPVIVSTHPRTQKRLDALNIGNLDSRI 256

Query: 241 VFSKPLGFFDYMKLQMNALCVLSDSGTITEEASLLNLPAITIRNAHERPEGMDVGTLIMA 300
            F KP GF DY+KLQM ALCV+SDSGTITEE SLLNLPA+TIRNAHERPEGMDVGTLIMA
Sbjct: 257 QFLKPFGFCDYVKLQMEALCVVSDSGTITEEGSLLNLPAVTIRNAHERPEGMDVGTLIMA 316

Query: 301 GLKAERVIDAIEIIASQRKRKSQPVLPVADYENPNVSKQVVRVVASYVDYINRVVWSKP 359
           GLK +RV+DA+ +I +Q +R S+ V  V DYE   VSK+++R+V SY DY+NR VW KP
Sbjct: 317 GLKKDRVLDAVAVIIAQHQRGSRVVAAVEDYEALAVSKKILRIVLSYTDYVNRTVWRKP 375


>gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  166 bits (419), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 165/295 (55%), Gaps = 10/295 (3%)

Query: 15  VLVHSGQNYDYELNQIFFNDLEIRQPDFFLEAAGETAAKTIAAVIEKSDALFAQEKPDAL 74
           VL+H+GQ+YD  +N  +F  L I  PD  LE    + A+  AA+++  +    Q +P A+
Sbjct: 37  VLLHTGQHYDVAMNHQYFEALGIPAPDINLEIGSGSHAQQTAAIMQHFEPALEQVQPAAV 96

Query: 75  LLYGDTNTCLA-VISAKRRKIPVFHMEAGNRCFDQRVPEELNRKVLDHLSDINMVLTEHA 133
           L+ GD N+ LA  + A ++ +PV H+EAG R  D+ +PEE+NR + D +SD+      +A
Sbjct: 97  LVLGDINSTLACALVAVKKGVPVVHVEAGLRSNDRSMPEEINRILTDQISDLLYTTEANA 156

Query: 134 RRYLIGEGIKPETIIKTGSHMREVIDHYRPK-IENSDVLS---RLNFEPGK-FFVVSAHR 188
            + L  EGI  E +   G+ M + + H   + I    +L+   R +F   K + V++ HR
Sbjct: 157 LQNLTREGIAAERVRFVGNVMIDTLRHNLARAISLPQILATQGREDFRHDKGYAVLTLHR 216

Query: 189 EENVDSPEAIKDLLETLQALVRKYGLPIFVSTHPRTRKRLEEIGYEELDS--RIVFSKPL 246
             NVD P  ++ LLET++ +     LP+    HPRTR  +E+ G   L    +I+   P+
Sbjct: 217 PSNVDDPAVLRALLETVRTI--SATLPVVFPLHPRTRGMIEKFGLAGLIDIPQILQLPPM 274

Query: 247 GFFDYMKLQMNALCVLSDSGTITEEASLLNLPAITIRNAHERPEGMDVGTLIMAG 301
           G+ + + L  +A   L+DSG I EE + L +P +T+R+  ERP  ++ GT  +AG
Sbjct: 275 GYLEMLGLMRDARLALTDSGGIQEETTALGVPCVTLRHNTERPITVEQGTNTLAG 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,020,045
Number of extensions: 38759
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)