BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0174.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313502|ref|YP_003777594.1| glycosyltransferase group 1 pro...   446   e-126

>gi|300313502|ref|YP_003777594.1| glycosyltransferase group 1
           protein [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  446 bits (1148), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 296/405 (73%), Gaps = 5/405 (1%)

Query: 1   MKILIVSQHFWPEGFPINDMAKALAAKGLDVDVLTGKPNYPDGEYFPGYKGFGCQQEAID 60
           M++LIVSQ+FWPEGF IN++A++L  +G+DVDVLTGKPNYP+G+ + GYK  GC +E+  
Sbjct: 1   MRVLIVSQYFWPEGFRINELAESLVQRGIDVDVLTGKPNYPEGKIYEGYKARGCVRESWQ 60

Query: 61  GVTVYRVPLVARGNRSAVRLVLNYLSFIAAACIFGPWLLRRRRYDAIFVYATSPMLQALP 120
           G  ++RVPL  RG RSA RL LNYLSFI +A I G W LRR + D IFVYA SP+LQALP
Sbjct: 61  GANIFRVPLFPRGFRSASRLALNYLSFILSAAIAGTWQLRRIKSDVIFVYAPSPLLQALP 120

Query: 121 ALFFGFLKRTRVTVWVQDLWPESLAATGYVKSPFVLRCLAKVIGFIYRHTDLLLVQSEAF 180
           AL  G+ KR  V ++VQDLWPESL ATGYV++   +R +  V+  IYR +DL+LV S  F
Sbjct: 121 ALLIGWFKRIPVVLYVQDLWPESLEATGYVRNRLAIRMVEWVVKLIYRRSDLILVSSLPF 180

Query: 181 RQSVQALAPGKQVIYYPNSVDAMFSTEQPDLLSSVDAPMPTLPERGFSVVFAGNIGAAQA 240
           R S+Q  +P  +++YYPNSVDA F   Q  L   V    P L E GF V+FAGN+GAAQA
Sbjct: 181 RGSIQRFSPSAEIVYYPNSVDASFCDPQSGLKPDV----PALDE-GFRVIFAGNVGAAQA 235

Query: 241 VEVIVGAAELLRHRTDISFHVFGKGSKWDWLAEEVGKRGLNNLHLPGRFPVETMPRLMRQ 300
           V VIV AA+ L+   DI   V G GS+ +W+  ++ +R L+NL L GRFPV+ MP L+ +
Sbjct: 236 VHVIVDAAQRLKEHRDIRLVVLGSGSELEWMRTQIQERELDNLFLAGRFPVQAMPNLLSR 295

Query: 301 ASALLVTLADEPIFAATVPSKVQAYMAAGRPIIASLNGEGARLVTQAQAGLAVPAEDPVA 360
           A ALLVTLAD  IFA TVP+K+QAYMA GRPIIAS+NGEGAR+V +A AG+AV AED  A
Sbjct: 296 ADALLVTLADRKIFAETVPNKIQAYMAVGRPIIASMNGEGARIVQEANAGIAVAAEDGAA 355

Query: 361 LADAVLRLATMAPEEREQLGSRGKMFSRQHFDREKLIEQLIIYLS 405
           +ADAVLRL  M+  +R+QLG  GK + RQ+FD E+L++ L+ +L+
Sbjct: 356 MADAVLRLHAMSQADRDQLGENGKRYYRQNFDHEQLVDDLVGHLT 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,335,332
Number of extensions: 57948
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 2
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)