BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0154.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311403|ref|YP_003775495.1| polymixin resistance glycosyltr...   151   9e-38

>gi|300311403|ref|YP_003775495.1| polymixin resistance
           glycosyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  151 bits (381), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 153/308 (49%), Gaps = 9/308 (2%)

Query: 39  RPLISVVIPVYKAERCLDELYLRLKNALEQVSSSFEIILVEDCGGDRSWEMIGALAASDA 98
           +P +SVVIPVY  E  L +L+ RL  AL+ +  S+E+I V D   DRS      + A   
Sbjct: 2   KPELSVVIPVYNEESGLSKLFERLYPALDALGYSYEVIFVNDGSRDRS----AGILAEQY 57

Query: 99  RVRG-----IQFSRNFGQHYGITAGLDCCRGDWVVVMDCDLQDRPEEIPRLYAKAQEGYD 153
           R+R      + F+ N+GQH  I AG +  RGD VV +D DLQ+ PEEI  L AK +EGYD
Sbjct: 58  RLRPDVTRVVLFNGNYGQHMAIMAGFEATRGDIVVTLDADLQNPPEEIGNLVAKMREGYD 117

Query: 154 VVLAKRGVRRDPLVKRITSHVFYKLFSYLADVKYDGDSGNFRIMSRKVVENFRRMGEQLR 213
            V + R  R+D   +   S    +L   +  +K        R   R V++   +  E   
Sbjct: 118 YVGSIRRKRQDSAWRTYASKAMNRLREKITRIKMTDQGNMLRAYGRNVIDLVNKCREINT 177

Query: 214 FFGGLVQWMGFPTSSIEVQHAERFAGKSNYTFAMLWNMASENIIAHSDKPLRLAVRFGFL 273
           F   L        + I V+H ER AG+S Y+   L  +  + +   S  PL+     G  
Sbjct: 178 FVPALAYTFSRNPTEIVVEHEERSAGESKYSLYSLIRLNFDLVTGFSLVPLQFFSLLGIG 237

Query: 274 MALFSFVYGAYILGYSLIYSSPIQGWSSLIVSLYFIGGVIITILGILGIYLGKTFDETKK 333
           ++  S      I+   L+  + + G  +L    +F+ GVI+  +G+LG Y+G+ + + + 
Sbjct: 238 LSFASAALFILIVLRRLLIGAEVGGVFTLFAITFFLMGVILFSIGLLGEYIGRIYMQVRA 297

Query: 334 RPLYIIRS 341
           RP Y++++
Sbjct: 298 RPRYVVQA 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,039,754
Number of extensions: 41206
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)