BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0151.p (675 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313138|ref|YP_003777230.1| glutamate-1-semialdhyde 2,1-ami... 114 2e-26 gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferas... 108 1e-24 gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferas... 85 2e-17 gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate amino... 76 1e-14 >gi|300313138|ref|YP_003777230.1| glutamate-1-semialdhyde 2,1-aminomutase [Herbaspirillum seropedicae SmR1] Length = 427 Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 113/423 (26%), Positives = 195/423 (46%), Gaps = 43/423 (10%) Query: 244 TGQKLWKRAKQVIPGGNMLLSKRAEMFLP-DLWPAYFSKAKGCKVWDLDGNEYIDMSIMG 302 T L+ RA+Q PGG ++ F P + +A+G WD +G YID I Sbjct: 4 TNASLFARAQQSTPGG---VNSPVRAFRSVGGTPRFIERAEGPWFWDAEGKRYIDY-IGS 59 Query: 303 IGTNTLGYGHPEVDDAVRRTIDAGNMSTFNCP--EEVYLAEKLIELHPWADMARFARSGG 360 G +G+ HPEV AV++ G +F P E+ +AE++I+L P + R SG Sbjct: 60 WGPAIVGHAHPEVIQAVQQAAARG--LSFGAPTEAEIEMAEEIIKLVPSIEQIRLVSSGT 117 Query: 361 EANSIAIRIARAASGKDKVAI---CGYHGWHDWYLSANLGDDKNLAGHLLPGLEPN-GVP 416 EA A+R+AR A+G+DK+ C YHG D L K +G L G + GVP Sbjct: 118 EATMSALRLARGATGRDKIIKFEGC-YHGHADSLLV------KAGSGLLTFGNPTSAGVP 170 Query: 417 QSLRGTVFPFNYNNFEELQALVDQ--HDIGVIKMEVVRN----FGPENDFLKKVRQLATE 470 + +YN+ +L+ ++I + +E V ++FL+ +R+L TE Sbjct: 171 EDFAKHTLVLDYNDAAQLEEAFKTAGNEIACVIVEPVAGNMNLVRASDEFLRTMRRLCTE 230 Query: 471 RGIVLIFDECTSGFRQTYGGIHKMYDVEPDMAMFAKALGNGYAITATIGKREIMEAAQT- 529 G +LIFDE SGFR GG ++ + PD+ K +G G + A G+ E+M+ Sbjct: 231 YGAILIFDEVMSGFRVARGGAQELNGIVPDLTALGKVIGGGLPVAAFGGRAEVMKHLAPL 290 Query: 530 --TFISSTFWTERIGPTAALATLDVMNRLKSWETITKTGLDITERWKKLAEKHGLSISTN 587 + + T + A +ATL ++ + + ++ + + A+ G++ + + Sbjct: 291 GGVYQAGTLSGNPVTVAAGMATLKIIQQPDFYTNLSTQTRKLADGLAAAAQAAGVTFAAD 350 Query: 588 GLAALTGFGFQSSNALAYKTLIT----------QEMLAKG-YLAGTSV---YVCTEHTPA 633 + + G F + +Y ++ +ML G Y A ++ +V +H+ A Sbjct: 351 AIGGMFGLYFDAKVPTSYAEVMQGDKERFNRFFHKMLDAGVYFAPSAFEAGFVSAQHSDA 410 Query: 634 VVD 636 +++ Sbjct: 411 IIE 413 >gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 426 Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 157/347 (45%), Gaps = 40/347 (11%) Query: 278 YFSKAKGCKVWDLDGNEYIDMSIMGIGTNTLGYGHPEVDDAVRRTIDAGNMSTFN-CPEE 336 Y +A ++WD++G +ID + GI G+ HP++ DA+R +D + + P Sbjct: 29 YAERAANAELWDVEGRRFIDFA-AGIAVLNTGHRHPKLLDAMRAQMDKFTHTAYQIVPYA 87 Query: 337 VY--LAEKLIELHP--WADMARFARSGGEANSIAIRIARAASGKDKVAI--CGYHGWHDW 390 Y LAE++ L P + F +G EA AI+IARA +G+ V G+HG Sbjct: 88 SYVELAERINRLTPGNYPKKTAFFSTGAEAVENAIKIARAHTGRPGVIAFAGGFHGRTMM 147 Query: 391 YLSANLGDDKNLAGHLLP-----GLEPNGV-----PQSLRGTVFPFNYNNFEELQAL--- 437 ++ L G + P G P V P +L G + + E ++ L Sbjct: 148 GMA--------LTGKVAPYKLGFGPFPGDVFHAPYPSALHGIT---SEDALEAVKGLFKS 196 Query: 438 -VDQHDIGVIKMEVVRN----FGPENDFLKKVRQLATERGIVLIFDECTSGFRQTYGGIH 492 ++ + I +E V+ + DF++ +R L E GI+LI DE SG+ +T G + Sbjct: 197 DIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRALCDEHGILLIADEVQSGYGRT-GKLF 255 Query: 493 KM--YDVEPDMAMFAKALGNGYAITATIGKREIMEAAQTTFISSTFWTERIGPTAALATL 550 M YDV PD+ AK+L G ++A G+ EIM+A + T+ + +ALA L Sbjct: 256 AMEHYDVLPDLMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGTYAGNPLAIASALAVL 315 Query: 551 DVMNRLKSWETITKTGLDITERWKKLAEKHGLSISTNGLAALTGFGF 597 DVM + + G + E K+L G+ A+ F Sbjct: 316 DVMEEEQLVTRGQRLGDKLQEHLKELRSSVPQIAEVRGVGAMVAVEF 362 >gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/334 (25%), Positives = 160/334 (47%), Gaps = 38/334 (11%) Query: 269 MFLPDLWPAYFSKAKGCKVWDLDGNEYIDMSIMGIGTNTLGYGHPEVDDAV----RRTID 324 M++ + F++ G + D +G Y+D + G NTLG+ + DA+ ++ I+ Sbjct: 12 MYVTNRPELVFTEGHGMWLTDHNGKRYLDY-LQGWAVNTLGHAPQCIADALAAQSKKLIN 70 Query: 325 AGNMSTFNCPEEVYLAEKLIELHPWADMARFARSGGEANSIAIRIAR-------AASGKD 377 + + +N P + LA KL+ + D FA SGGEAN AI++AR AA G Sbjct: 71 P-SPAFYNEPS-IELA-KLLTANSVFDRVFFANSGGEANEGAIKLARKWGKKNPAADGSA 127 Query: 378 KVAICGY-HGWHDWYLSANLGDDKNLAGHLLPGLEPNGVPQSLRGTVFPFNYNNFEELQA 436 + I + H +H L+ K+ + P G P+++ N+ E ++A Sbjct: 128 RFEIITFKHSFHGRTLATMSASGKDGWDTMFAPQVP-GFPKAV--------LNDLESVKA 178 Query: 437 LVDQHDIGVIKMEVVRNFG----PENDFLKKVRQLATERGIVLIFDECTSGFRQTYGGI- 491 L+ +H + V+ +E V+ G +F++ +R L E+ ++LI DE SG +T G + Sbjct: 179 LIGEHTVAVM-LEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRT-GQLF 236 Query: 492 -HKMYDVEPDMAMFAKALGNGYAITATIGKREI--MEAAQTTFISSTFWTERIGPTAALA 548 ++ +EPD+ AK +G G + A + + EI EA + T+ + +A Sbjct: 237 AYQHSGIEPDIMTLAKGIGGGVPLAALLAREEIACFEAGEQ---GGTYNGNPLMTAVGVA 293 Query: 549 TLDVMNRLKSWETITKTGLDITERWKKLAEKHGL 582 + + + E++ + G + +R +++EK+G Sbjct: 294 VIKELLKPGFMESVRERGQYLRQRSLEISEKYGF 327 >gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 147/359 (40%), Gaps = 52/359 (14%) Query: 276 PAYFSKAKGCKVWDLDGNEYIDMSIMGIGTNTLGYGHPEVDDAVRR---TIDAGNMSTFN 332 P A+G D GN +D G+ LG+ HP++ AV++ T+D Sbjct: 29 PRMLVSAEGMHYRDDAGNTILD-GTAGLWCVPLGHAHPKIVSAVQKSVATLDYAPSFQLG 87 Query: 333 CPEEVYLAEKLIELHPWADMARFAR-----SGGEANSIAIRIA----RAASGKDKVAICG 383 P LAE+L RF SG EA A++IA RA + + G Sbjct: 88 HPSAFELAERLKAY----TGNRFGNVFYTGSGSEAVDTALKIALAYHRAKGNATRTRLIG 143 Query: 384 ----YHG--WHDWYLSANLGDDKNLAGHLLPGLEPNGVPQSLRGTVFP-----FNYNNFE 432 YHG + + G+ K + LLPG++ +L F + + + Sbjct: 144 RERGYHGVGFGGMSVGGIGGNRKTFSTALLPGVDHLPHTHNLEKNAFTKGEPEYGAHLAD 203 Query: 433 ELQALVDQHDIGVIKMEVVRNFG-------PENDFLKKVRQLATERGIVLIFDECTSGF- 484 EL+ LV HD I +V P +LK++R++ T+ GI+LIFDE +GF Sbjct: 204 ELERLVTLHDASNIAAVIVEPVAGSTGVLIPPKGYLKRLREICTKHGILLIFDEVITGFG 263 Query: 485 RQTYGGIHKMYDVEPDMAMFAKALGNGYA-ITATIGKREIMEAAQT------TFISSTFW 537 R +DVEPD+ AK L NG + A K EI +A F T+ Sbjct: 264 RLGTPFASDYFDVEPDIFTTAKGLTNGVVPMGAVFVKPEIHDAFMNGPDGIELFHGYTYS 323 Query: 538 TERIGPTAALATLDVMNRLKSWETITKTGLDITERWKKLAEK-----HGLSISTNGLAA 591 + A LA+L+V E + + + + +++ A H + + T GL A Sbjct: 324 GHPLACAAGLASLEVFQT----EGVLENAQAVADYFQEAAHALRGLPHVIDVRTIGLIA 378 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,084,256 Number of extensions: 85880 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 4 Length of query: 675 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 583 Effective length of database: 1,184,250 Effective search space: 690417750 Effective search space used: 690417750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)