BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0145.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar py...    62   8e-11

>gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar
           pyrophosphorylase subunits gamma/epsilon [Herbaspirillum
           seropedicae SmR1]
          Length = 238

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 30/242 (12%)

Query: 7   KGIILAGGSGTRLYPVTQAVSKQLLPVHDKPMIYYPLSTLMLAGIRDILIISTPYDLPMF 66
           K +I A G G R+ P+T +  K LL V  +P+I + + +L+ AGI +I +I+  +   M 
Sbjct: 2   KAMIFAAGRGERMRPLTDSCPKPLLKVRGRPLIVWQILSLVRAGITEI-VINHAHLGQMI 60

Query: 67  QRLLGDGSAWGISLSYAEQPSPDGLAQAFTIGRNFIGGHPSALILGDNIFYGNEFE-SQL 125
           +  LGDGS +G  L Y+ + +    A      R+ +G  P   + GD   +   F+ S+L
Sbjct: 61  EDTLGDGSRFGARLLYSPEGTALETAGGIAQARHLLGEQPFIAVSGD--IWCPHFDYSEL 118

Query: 126 RTA------------DQQTDGAYVFAYYVTDPERYGVVDFDEQRRAISIEEKPVVPKSNY 173
            T             + Q D A++  Y V +P  +   DF     A++ E +P +  +N 
Sbjct: 119 LTVLEDEDPWGKPLPEDQRDMAWL--YLVKNPPFHPEGDFALNNFALANEGQPKLTFANI 176

Query: 174 AVTGLYFYDRQVCDIAASVKPSARGELEITDVNRVYLEQNQLSVALMGRGMAWLDTGTHE 233
            V     Y  Q+ D    + P    +L    + R Y +Q ++   +  RG  W + GT +
Sbjct: 177 GV-----YRPQMFD---GIPPGTHAKL--GPLLRQYADQGRIGGDVY-RG-EWHNVGTID 224

Query: 234 SL 235
            L
Sbjct: 225 QL 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 993,797
Number of extensions: 42475
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)