BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0144.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309812|ref|YP_003773904.1| bis(5'-nucleosyl)-tetraphosphat...   373   e-104

>gi|300309812|ref|YP_003773904.1| bis(5'-nucleosyl)-tetraphosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  373 bits (957), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/269 (67%), Positives = 210/269 (78%), Gaps = 5/269 (1%)

Query: 4   YAIGDLQGCNQQLQNLLDLIEKT--SPDAQLLFVGDLVNRGPQSLQTLRRLRELGSRAKA 61
           Y IGDLQGC   L   LDL  +   S DAQL+F GDL+NRGPQSLQTLR + ++G RA+A
Sbjct: 7   YVIGDLQGC---LTPFLDLQRQLPLSADAQLIFAGDLINRGPQSLQTLRTVMQMGQRAQA 63

Query: 62  VLGNHDLHLLAVSQGIRPQHRTDTLDDILNAPDRDELLDWLRHRPLALFEQGHLLFHAGL 121
           VLGNHDLHLLAV+ GIRP HR DTL +IL APDR+EL+ WLRHRPLA+  Q HL+ HAG+
Sbjct: 64  VLGNHDLHLLAVACGIRPAHRDDTLAEILQAPDREELIHWLRHRPLAIHAQDHLIVHAGV 123

Query: 122 FPQWDAAKTMALAQEVEAMLRGPDWIDFLRHMYGNEPAVWSDELEGYDRLRCIINTLTRM 181
            PQWD  + +ALA EVE MLR   WI FLRHMYGN+P  WSD+L GYDRLRCIIN  TR+
Sbjct: 124 LPQWDLQQALALAGEVETMLRSDQWIAFLRHMYGNQPDRWSDDLVGYDRLRCIINAFTRV 183

Query: 182 RFCTPDGAIDFKIKEGLGAAPDGYLPWFDMPGRQTAGVTCVFGHWASLGLTRRPNLIGLD 241
           RFC  DG +DF +KEG  AAP G  PWFD+PGR+T  VT VFGHW++LGL  RPNLI LD
Sbjct: 184 RFCQADGTMDFAVKEGAAAAPAGLTPWFDVPGRRTEEVTVVFGHWSTLGLVMRPNLIALD 243

Query: 242 TGCVWGGKLTAVRLEDRALFQVDCPRAEQ 270
           TGCVWGG+L+AVRLEDRALFQV CP+A +
Sbjct: 244 TGCVWGGQLSAVRLEDRALFQVQCPQARR 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 893,675
Number of extensions: 39347
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)