BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0143.p
         (654 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum ...   545   e-156
gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase ...   457   e-129

>gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score =  545 bits (1405), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/304 (86%), Positives = 281/304 (92%), Gaps = 2/304 (0%)

Query: 307 MKLHIKNGRLIDPANNIDAQQDVFVADGKVAGIGQAPRPFTADKTIDASGLVVAPGLVDL 366
           MKLHIKNGRLIDPAN IDAQQDV+VA GK+ G+GQAP  F A+KTIDA+GLVVAPGLVDL
Sbjct: 1   MKLHIKNGRLIDPANGIDAQQDVYVAAGKIVGVGQAPADFVANKTIDATGLVVAPGLVDL 60

Query: 367 SARLREPGYEYKATLESEMQAAMQGGVTSLLCPPDTDPVLDEPGLVEMLKHRAKSLNQAH 426
           SARLREPGYEYKATLESEMQAA+QGGVTSL+CPPDTDPVLDEPGLVEMLKHRA+SLNQAH
Sbjct: 61  SARLREPGYEYKATLESEMQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARSLNQAH 120

Query: 427 VYPLGALTMGLKGKALTEMAELTEAGCVGFSQADEPVLDTTVLLSALQYAKTFDYTVWLR 486
           VYPLGALT GLKGKALTEMAELT+AGC+GFSQA+EP+ DTTVLLSALQYAKTF+YTVWLR
Sbjct: 121 VYPLGALTAGLKGKALTEMAELTDAGCIGFSQAEEPITDTTVLLSALQYAKTFNYTVWLR 180

Query: 487 PQDPHLGRHGIAHSGPAASRLGLSGVPVMSETIALYTIFELVRATGARVHLCRMSSAAGL 546
           PQDPHLGR GIAHSGPAASRLGLSGVPVMSETIALYT+FEL+RATGARVHLCRMSSAAGL
Sbjct: 181 PQDPHLGRSGIAHSGPAASRLGLSGVPVMSETIALYTLFELMRATGARVHLCRMSSAAGL 240

Query: 547 ELVRAAKREGLPVTCDVGAHHIHLSDMDIGFFDSNARVNPPFRSQRDRDAI--XLKVGDI 604
           ELVR AK EGLPVTCDVG HHIHL D+DIGFFDSNAR+ PP RSQRDR+AI   L  G I
Sbjct: 241 ELVRQAKSEGLPVTCDVGVHHIHLCDLDIGFFDSNARMTPPLRSQRDREAIRTALLDGTI 300

Query: 605 ADVC 608
             VC
Sbjct: 301 DAVC 304



 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 46/56 (82%)

Query: 599 LKVGDIADVCIFDPKTRWTVEAKALASQGKHTPFLGYELSGQVKATIVSGHVAFER 654
           L VG +AD+C+FDP   W V+  ALASQGKHTPFLGYEL G VKATIVSGH+AFER
Sbjct: 373 LAVGSVADLCLFDPNAMWKVQGAALASQGKHTPFLGYELPGVVKATIVSGHIAFER 428


>gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase
           catalytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/231 (96%), Positives = 228/231 (98%)

Query: 1   MLNPQLNKNGELQHLLTIEGLPKAIITNILDTASSFVSIGDREVKKVPLMRGKSVFNLFF 60
           MLNPQLNKNGELQHLLTIEGLP++I+T+ILDTASSFVSIGDREVKKVPLMRGKSVFNLFF
Sbjct: 1   MLNPQLNKNGELQHLLTIEGLPRSILTHILDTASSFVSIGDREVKKVPLMRGKSVFNLFF 60

Query: 61  ENSTRTRTTFEIASKRLSADVINLNISASSASKGESLLDTIDNLAAMHADMFVVRHSQSG 120
           ENSTRTRTTFEIASKRLSADVINLNI ASS SKGESLLDTIDNLAAMHADMFVVRH+QSG
Sbjct: 61  ENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMFVVRHAQSG 120

Query: 121 APYLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGDILH 180
           AP+LIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGDILH
Sbjct: 121 APFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGDILH 180

Query: 181 SRVARSDIHGLTTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVD 231
           SRVARSDIH LTTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVD
Sbjct: 181 SRVARSDIHALTTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVD 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,023,212
Number of extensions: 85041
Number of successful extensions: 256
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 3
Length of query: 654
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 563
Effective length of database: 1,188,985
Effective search space: 669398555
Effective search space used: 669398555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)