BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0137.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 449 e-127 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 199 2e-52 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 184 8e-48 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 180 1e-46 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 178 4e-46 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 449 bits (1154), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/266 (83%), Positives = 237/266 (89%), Gaps = 6/266 (2%) Query: 28 VLSAQRVEKTYRNGTRALDEVRLDIRRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIR 87 VLSAQRVEKTYRNGT ALDEVRLDI RGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIR Sbjct: 19 VLSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIR 78 Query: 88 WWGKNLATVGTPDRTLAMVFQEATLMPWASVEQNVRLPLDLKHMPRADSDVRVQDSLKLV 147 WWG NLATVGTP+RTLAMVFQEATLMPWA+VEQNVRLPLDL+H+PRA +D RV SLK V Sbjct: 79 WWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRV 138 Query: 148 GLDRFHDAYPRELSGGMQMRASIARALATRPNLLLMDEPFGALDEFTRNKLDADLRKIWS 207 GL+ FH PRELSGGMQMRASIARALAT PNLLLMDEPFGALDEFTRNKLDADLR IWS Sbjct: 139 GLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWS 198 Query: 208 QQDLTVVFVTHSIYEAVYLSSRVVVMAARPGRVIADVPIEAPGAGGMRDDAFRISPEFMG 267 +QDLTVVFVTHSIYEAV+LSSRV+VMAARPGRVIADV I+APG RD+AFR+S FM Sbjct: 199 RQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAPGP---RDEAFRMSAPFMQ 255 Query: 268 YCKILSDYLTLANQENQEGGAHDSAH 293 YCK LSDYLTLA NQ+G H++ H Sbjct: 256 YCKTLSDYLTLA---NQQGDGHEAQH 278 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 146/240 (60%), Gaps = 12/240 (5%) Query: 29 LSAQRVEKTYRNGTR---ALDEVRLDIRRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGH 85 + Q V K ++ R AL ++ LDI G+FV LLGPSGCGKSTLL AG PS G Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 86 IRWWGKNLATVGTPDRTLAMVFQEATLMPWASVEQNVRLPLDLKHMPRADSDVRVQDSLK 145 I K ++ G PDR MVFQE L PW +VEQNV L++K P+A+ RV L Sbjct: 70 ILTDDKVVSEPG-PDR--GMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLD 126 Query: 146 LVGLDRFHDAYPRELSGGMQMRASIARALATRPNLLLMDEPFGALDEFTRNKLDADLRKI 205 +GL F +P++LSGGM+ R +IAR LA ++LMDEPFGALD TR L +L +I Sbjct: 127 KLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRI 186 Query: 206 WSQQDLTVVFVTHSIYEAVYLSSRVVVMAARPGRVIADVPIEAPGAGGMRDDAFRISPEF 265 W + T+VFVTHSI EA+YL+ R+VVM RPG V D+ + P +RD A PEF Sbjct: 187 WDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLP---RLRDPA---DPEF 240 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 184 bits (467), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 98/199 (49%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 44 ALDEVRLDIRRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGKNLATVGTPDRTL 103 ALD V LDI G FV LG SGCGKSTLL AG S G I G+ V P Sbjct: 21 ALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQ---PVSGPGAER 77 Query: 104 AMVFQEATLMPWASVEQNVRLPLDLKHMPRADSDVRVQDSLKLVGLDRFHDAYPRELSGG 163 +VFQ+ +L+PW SV+ NV L L + ++DS R Q+ L+LVGL F A P ELSGG Sbjct: 78 GVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGG 137 Query: 164 MQMRASIARALATRPNLLLMDEPFGALDEFTRNKLDADLRKIWSQQDLTVVFVTHSIYEA 223 M+ R +ARALA P +LLMDEPFGALD TR ++ L +W++ V F+THSI EA Sbjct: 138 MRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEA 197 Query: 224 VYLSSRVVVMAARPGRVIA 242 ++L + V+VM+ RPGR++A Sbjct: 198 LFLGTEVIVMSPRPGRIVA 216 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 10/206 (4%) Query: 44 ALDEVRLDIRRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGKNLATVGTPDRTL 103 A++++ L R GEF++++GPSGCGKST +K+ GL++P+ G + G+ TV P + + Sbjct: 22 AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNRGSVVIDGQ---TVTGPLKFV 78 Query: 104 AMVFQEATLMPWASVEQNVRLPLDLKH-------MPRADSDVRVQDSLKLVGLDRFHDAY 156 M FQ TL+PW + NV LPL++ +A+ R LK VGLD + D + Sbjct: 79 GMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTERALSLLKTVGLDGYADKF 138 Query: 157 PRELSGGMQMRASIARALATRPNLLLMDEPFGALDEFTRNKLDADLRKIWSQQDLTVVFV 216 P +LSGGMQ RASI RAL P +LL+DEPFGALD FTR +L LR +W+++ V+ V Sbjct: 139 PWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILV 198 Query: 217 THSIYEAVYLSSRVVVMAARPGRVIA 242 TH + EA +L+ + VM+ RPGR++ Sbjct: 199 THDLREAAFLADTIYVMSKRPGRIVV 224 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 178 bits (452), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 114/271 (42%), Positives = 154/271 (56%), Gaps = 21/271 (7%) Query: 1 MKRDDHAIPQLAAWEQGVADSAAVTDAVLSAQRVEKTYRNGT---RALDEVRLDIRRGEF 57 M H I LAA + + +L RV YR+ T +A EV D+ + Sbjct: 1 MHVSTHEITSLAAQD--------LPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADR 52 Query: 58 VSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGKNLATVGTPDRTLAMVFQEA-TLMPWA 116 LLGPSGCGKS+LLK AG P+ G IR G+ L G PDR +VFQE L PW Sbjct: 53 FVLLGPSGCGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPG-PDRI--VVFQEFDQLPPWK 109 Query: 117 SVEQNVRLPL-DLKHMPRADSDVRVQDSLKLVGLDRFHDAYPRELSGGMQMRASIARALA 175 +V QNV PL + + + D+ R + L VGL RF DAYP LSGGM+ R +IARALA Sbjct: 110 TVLQNVMFPLLASRTLGKRDAAERARHYLDKVGLARFADAYPHTLSGGMKARVAIARALA 169 Query: 176 TRPNLLLMDEPFGALDEFTRNKLDADLRKIWSQQDLTVVFVTHSIYEAVYLSSRVVVMAA 235 +P +LLMDEPF ALD TR K+ +L +W + T++FVTHSI EA+ + +R+++++ Sbjct: 170 MQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEALVVGNRILLLSP 229 Query: 236 RPGRVIADVP-----IEAPGAGGMRDDAFRI 261 PGRV A++ + + G G + A RI Sbjct: 230 HPGRVRAEINSHQYDLSSLGGVGFQQTAQRI 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 962,681 Number of extensions: 40056 Number of successful extensions: 475 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 308 Number of HSP's successfully gapped: 135 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)