BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0136.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase [H...   639   0.0  
gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygena...    83   4e-17

>gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/338 (88%), Positives = 318/338 (94%)

Query: 1   MLVTKQKVLRKFWYAVMPIAMLEDGPKPFTLLGENIVVWLKSPGKPAALQDRCCHRTAKL 60
           MLVT+QKVLR+FWYA+MPIA L  GP+PFTLLGE +VVWLK  G PAALQDRCCHRTA+L
Sbjct: 1   MLVTQQKVLRRFWYALMPIAQLRQGPQPFTLLGEKLVVWLKEDGAPAALQDRCCHRTARL 60

Query: 61  SKGFVDNGNIVCGYHGWTFDCAGACVRVPQNADGSVPAGAMVQSYYCEERYGYVWVALEK 120
           SKGFV+NGNIVCGYHGWTF+  GACVRVPQNADGSVPAGA V+SY+C+ERYGYVWVALE+
Sbjct: 61  SKGFVENGNIVCGYHGWTFNGEGACVRVPQNADGSVPAGACVKSYFCKERYGYVWVALEE 120

Query: 121 PLRDIPFFPEETTPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRGTFGLYDQPKPE 180
           PLRDIP FPEE  PGYRRIFQFYERWETSALRMMENSFDNSHFSYVHR TFGLYDQPKPE
Sbjct: 121 PLRDIPEFPEEGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKPE 180

Query: 181 KYEINETDYGFEAETLVPIKNVPASYRVTGTTDDTTMRHMFNRWYLPFSRRFGCQYPSSG 240
           KYEI ETDYGFEAET VPIKNVPAS+RVTG+T DTT+RHMFNRWYLPF RRFGC YP SG
Sbjct: 181 KYEIAETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPESG 240

Query: 241 RHHIIYNCATPIDDGSIMLAQWLYRNDTEEDCAEADLIAWDAPILVEDREILEATDPDAC 300
           RHHIIYNCATPIDDGSIML+QWLYRNDTEE+C+EA+LIAWDAPILVEDREILEATDPDAC
Sbjct: 241 RHHIIYNCATPIDDGSIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDAC 300

Query: 301 IDVRRKQEFHMASDRPGLIMRRMLLQLLEEHGESEVFR 338
           IDVRR+QEFHMASDRPGLIMRRMLLQLLEEHGESEVFR
Sbjct: 301 IDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFR 338


>gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygenase
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 29/231 (12%)

Query: 10  RKFWYAVMPIAMLEDGPKPFTLLGENIVVWLKSPGKPAALQDRCCHRTAKLSKGFVDNGN 69
           +  WY       ++  P    + GE IV +  + GK AA++D C HR A LS GFV  G 
Sbjct: 4   KNAWYVACTPDEIDSKPLGRQICGEKIVFYRGAGGKVAAVEDFCPHRGAPLSLGFVREGQ 63

Query: 70  IVCGYHGWTFDCAGACVRVPQNADGSVPAGAMVQSYYCEERYGYVWVALEKPLRDIPFFP 129
           +VCGYHG    C G  + +P       P    ++SY  EERYG++WV         P   
Sbjct: 64  LVCGYHGLEMGCDGKAISMPGQRVRGFPC---IRSYPVEERYGFIWV--------WPGDK 112

Query: 130 EETTPGYRRIFQFYER--WETSA---------LRMMENSFDNSHFSYVHRGTFG---LYD 175
           E+  P      ++ +   W               M++N  D +H +YVH  + G   + +
Sbjct: 113 EQADPAQIHHLEWADNPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASSIGQKEIDE 172

Query: 176 QPKPEKYEINETDYGFEAETLVPIKNVPASYRVTGTTDDTTMRHMFNRWYL 226
            P   + E  +       + ++P      + R  G  DD  +    +RW +
Sbjct: 173 APVNTRVEGEQVITSRFMDNIMPPPFWRMALRGNGLADDVPV----DRWQI 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,161,574
Number of extensions: 48606
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)