BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0134.p
         (340 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309799|ref|YP_003773891.1| nitrate/sulfonate/bicarbonate A...   563   e-162

>gi|300309799|ref|YP_003773891.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  563 bits (1450), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 267/303 (88%), Positives = 286/303 (94%)

Query: 38  QAQEKVTVLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQADFS 97
           QAQ+KVT+LSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQADFS
Sbjct: 27  QAQDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQADFS 86

Query: 98  MGYDFTVLKGIEQGLPLVTVGTSFQSDLQGMMTHADVANLGALKDKTILVAGSGQSSWWP 157
           MGYDFTV+KG+EQGLPLVTVGTSFQSDLQGMMTH DVA+LG LK+KTILVAGSGQSSWWP
Sbjct: 87  MGYDFTVMKGVEQGLPLVTVGTSFQSDLQGMMTHDDVASLGGLKNKTILVAGSGQSSWWP 146

Query: 158 WLKARYGYTDAQSKAYTFNLQPFFADPNTVQQAYPSSELFQAEKSGAKANFFLFAQEGYP 217
           WLKA+YGYTDAQS+AYTFNLQPFFADPN  QQAYPSSELFQA+K+G K+ FFLFA EGYP
Sbjct: 147 WLKAKYGYTDAQSRAYTFNLQPFFADPNIAQQAYPSSELFQADKAGVKSKFFLFASEGYP 206

Query: 218 PYGTTIITLQKMVATKPDLVKRFVKATAEGWKSYLEDPSAGNALIKKDNKEMGDEQLAYA 277
           PYGTTI+TLQK VATKPDLV+RFVKATAEGWKSYLEDP+ GNALIK DNK MGDEQLAYA
Sbjct: 207 PYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSYLEDPAPGNALIKADNKNMGDEQLAYA 266

Query: 278 VRKLKELKVVTGGDAAKQGIGIMTDERWKKTYETMVATGLLKADVDWHKAYTTQFVKDMH 337
           + KLKELKVVTGGDAA+ GIG+MTDERWK+TYE MVATGLLKA  D+HKAYTTQFVKDM 
Sbjct: 267 LGKLKELKVVTGGDAARLGIGVMTDERWKQTYEVMVATGLLKAGTDYHKAYTTQFVKDMK 326

Query: 338 VMP 340
           VMP
Sbjct: 327 VMP 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 999,159
Number of extensions: 39701
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,212,660
Effective search space: 308015640
Effective search space used: 308015640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)