BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0132.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309797|ref|YP_003773889.1| carboxymethylenebutenolidase [H...   445   e-126

>gi|300309797|ref|YP_003773889.1| carboxymethylenebutenolidase
           [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  445 bits (1145), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/293 (73%), Positives = 242/293 (82%), Gaps = 16/293 (5%)

Query: 1   MNDLKNDVDSLAGTTGLLDAGNRRTFI----------------XQTMIKTDTVGLTAGEV 44
           MNDL+ND +SL G + L    +RR+F+                 QTMIKTDT GLTAGEV
Sbjct: 1   MNDLRNDFNSLLGQSTLSGNADRRSFLKTALGTGFAAAVLPVCAQTMIKTDTQGLTAGEV 60

Query: 45  SVTVNGQKVPAYRAQPEGKTNLPVILVISEIFGVHEHIADIARRFAKLGYLAIAPDFFVR 104
           S+ VNGQ+VPAYRAQPE KT LPVI+V+SEIFGVHEHIADIARRFAKLGYLAIAPDFFVR
Sbjct: 61  SIEVNGQRVPAYRAQPERKTGLPVIIVVSEIFGVHEHIADIARRFAKLGYLAIAPDFFVR 120

Query: 105 QGNPAAYPTIAELNKEIISKVPDEQVFGDLDAYVAWAGQNGGNPDKIGINGFCWGGRIVW 164
           QGNP AY +IAEL K+IISKVPD QV GD+DAYV WAG++GG+  ++GINGFCWGGRIVW
Sbjct: 121 QGNPMAYTSIAELQKDIISKVPDAQVMGDIDAYVKWAGEHGGDIRRLGINGFCWGGRIVW 180

Query: 165 LYSARNPKIKAGAAWYGRIVGEKSALQPQHPIDIAPTLKTPVLGLYGGKDGGIPVATVEQ 224
           LYSA NPK+KAGAAWYGR+VGEKS L PQ PIDIAPTLKTPV+GLYGGKD GIPV+TVEQ
Sbjct: 181 LYSAHNPKVKAGAAWYGRLVGEKSELFPQQPIDIAPTLKTPVIGLYGGKDQGIPVSTVEQ 240

Query: 225 MKEALAKTGNKSEFVVFPNSGHAFNADYRPSYVEADAKEGWKRAVEWFKSHGV 277
           MKEAL K GNKSEF V+ NSGHAFNADYRPSYVEADAK+ W + V +FK HGV
Sbjct: 241 MKEALQKAGNKSEFHVYMNSGHAFNADYRPSYVEADAKDAWSKVVAFFKQHGV 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 978,682
Number of extensions: 44359
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)