BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0131.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 354 5e-99 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 290 8e-80 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 276 9e-76 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 273 7e-75 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 273 1e-74 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 354 bits (908), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 198/236 (83%), Positives = 208/236 (88%), Gaps = 8/236 (3%) Query: 12 TVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIAFQ 71 TVKQNAENA QAN LA+AASDVAVQGGSIVSQVVQTM+SINASSQKV DI+SVIDGIAFQ Sbjct: 318 TVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIAFQ 377 Query: 72 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKL 131 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKL Sbjct: 378 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKL 437 Query: 132 VEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVEQA 191 VEQAG TMHDIVTSIRRVTDVM+EI AN EQSSGIEQVNEAIIQIDDMTQQNAALVEQA Sbjct: 438 VEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQA 497 Query: 192 AAAAQSLQDQAANLTALVSVFKLDARQLNAPP--------PTQRTIDITPMHPELP 239 AAAA+SLQ+QAA L LVSVF+LDA Q + +R ID+TP PELP Sbjct: 498 AAAARSLQEQAAGLQQLVSVFRLDAAQAHGHTAAPAHAPAAVERVIDVTPGAPELP 553 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 290 bits (742), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 161/228 (70%), Positives = 196/228 (85%), Gaps = 4/228 (1%) Query: 12 TVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIAFQ 71 TV+QNA+NA+QA+QLA +AS VA QGG +VSQVV TM +INASS+K+VDIISVIDGIAFQ Sbjct: 312 TVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQ 371 Query: 72 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKL 131 TNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK LI DSVGKV++GS+L Sbjct: 372 TNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRL 431 Query: 132 VEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVEQA 191 VEQAG TM ++V+S+RRVTD+++EI++A++EQ+ GIEQ+N AI Q+D +TQQNAALVE+A Sbjct: 432 VEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEA 491 Query: 192 AAAAQSLQDQAANLTALVSVFKLDARQLNAPPPTQRTIDITPMHPELP 239 AAAA S+Q QA L +VSVF+L R+ P +R ID+TP P LP Sbjct: 492 AAAAASMQTQAGRLMQMVSVFRLSERE----PLVRREIDVTPSSPVLP 535 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 276 bits (707), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 157/206 (76%), Positives = 183/206 (88%) Query: 10 TXTVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIA 69 T TVKQNA+NA+QANQLAV+ASDVAV GG +V QVV TM SIN SS+K+VDIISVIDGIA Sbjct: 389 TSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIA 448 Query: 70 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 129 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LI DSV KVE GS Sbjct: 449 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGS 508 Query: 130 KLVEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVE 189 +LV QAG TM ++V+S+RRVTD++ EI++A+ EQSSGI +V A+ Q+D+ TQQNAALVE Sbjct: 509 QLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVE 568 Query: 190 QAAAAAQSLQDQAANLTALVSVFKLD 215 QAAAAA+SLQ+QAA+L A+V+ FKLD Sbjct: 569 QAAAAAKSLQEQAAHLAAVVAGFKLD 594 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 273 bits (699), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 151/219 (68%), Positives = 187/219 (85%) Query: 10 TXTVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIA 69 T TV+QNA+NA+QANQ+AV+AS++A+QGG IV +VV TM+ IN SS+K+VDII VIDGIA Sbjct: 312 TSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIA 371 Query: 70 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 129 FQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI DSVGKVE GS Sbjct: 372 FQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGS 431 Query: 130 KLVEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVE 189 LV QAG TM +V+S+R VTD+++EI++A++EQSSGIE++N A+ Q+D+ TQQNAALVE Sbjct: 432 ALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVE 491 Query: 190 QAAAAAQSLQDQAANLTALVSVFKLDARQLNAPPPTQRT 228 QAAAAA+S+Q+QA LT +S+FKL+ + P RT Sbjct: 492 QAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRT 530 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 273 bits (697), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 157/205 (76%), Positives = 184/205 (89%) Query: 10 TXTVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIA 69 T TVKQNA+NA+QAN LA AS+VAVQGGS+V QVVQTM IN +S+K+VDIISVIDGIA Sbjct: 309 TSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVIDGIA 368 Query: 70 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 129 FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK LI DSV +V+NGS Sbjct: 369 FQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVSRVDNGS 428 Query: 130 KLVEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVE 189 +LVEQAG TM ++V S+RRVTDV++EI++A++EQS GIEQ+N AI Q+D +TQQNAALVE Sbjct: 429 RLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAALVE 488 Query: 190 QAAAAAQSLQDQAANLTALVSVFKL 214 +AAAAAQSLQ+Q+ L+A VSVFKL Sbjct: 489 EAAAAAQSLQEQSTRLSATVSVFKL 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.121 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 395,931 Number of extensions: 9496 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 70 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)