BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0127.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309794|ref|YP_003773886.1| Rossmann fold nucleotide-bindin...   422   e-119

>gi|300309794|ref|YP_003773886.1| Rossmann fold nucleotide-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 248

 Score =  422 bits (1086), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/235 (85%), Positives = 223/235 (94%), Gaps = 1/235 (0%)

Query: 1   VDDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARTKPDDPHYALCVDI 60
           V DIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSAR +PD+PHY LCV+I
Sbjct: 14  VGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARIRPDNPHYQLCVEI 73

Query: 61  ARRLSDAGFAVISGGGPGIMEAANKGAFDGASPSVGLNIELPHEQHGNGWQDISLSFRHF 120
           AR +SDAG+AVISGGGPGIMEAANKGA++GASPSVGLNIELPHEQHGN WQDISLSFRHF
Sbjct: 74  ARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHGNAWQDISLSFRHF 133

Query: 121 FARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRLMPVILVGSKFWAGLMEWIR 180
           FARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSR+MPVILVGS+FWAGL++WI+
Sbjct: 134 FARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILVGSQFWAGLVDWIK 193

Query: 181 TRLVDDGMISAKDLDLLQVIDDPAEVVVAVQKFYAARQKPADP-EDTERQTGMYL 234
           TRLVDDGMIS KD++LLQVID+PAEV+ A+QKF+A + KPA+  ++ ERQ+GMYL
Sbjct: 194 TRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEKAKPAETQQEAERQSGMYL 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 786,280
Number of extensions: 34536
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)