BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0126.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311194|ref|YP_003775286.1| signal peptide protein [Herbasp...   106   3e-24
gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1 sub...    66   5e-12

>gi|300311194|ref|YP_003775286.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 539

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 2/114 (1%)

Query: 215 SAASEQAAVLAAVRDWAAAWSRKDVDAYLSYYADDFRTPNGESRNDWAAQRRSRIDSRKR 274
           SA  ++ AVLAA+  WA AWS KDV  YL +YA DF TP G SR +WA +RR+RI+ + R
Sbjct: 424 SAEQDKTAVLAALNGWAKAWSDKDVRGYLGHYASDFDTPKGASRKEWAEERRARIEDKGR 483

Query: 275 IAVEIVAPRLAMNGDGSEATVAFTQNYLSDQLVETGAKTLVLVRRGDAWKILQE 328
           I+V++    +++NG+   ATV + Q Y SD+L     KTL+ V++G+ W I QE
Sbjct: 484 ISVKVSNATVSINGNT--ATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWLIKQE 535


>gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1
           subfamily protein [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 60/125 (48%)

Query: 54  WLQKAAHQGHSNAQFSLGTSYLLGDGVPKSTASAIEWLNKSAQQGNTLAQANLGAIYLNG 113
           WL+ AA Q    AQ  LG   L G+G       A+ WL  +AQ  +  A   +G    +G
Sbjct: 35  WLRAAASQSVPRAQAILGQRLLFGEGCAADAGEAVHWLELAAQADDLHAINLMGRCCEHG 94

Query: 114 DGVAQNFRVALSWFEKAAAHGLPLAQYSLGKMHQNGYGVRTDEAMAAQWYGRAAAQDYAP 173
            G  ++  +A+ W+  AA+ GL    Y+L  +  +G GV  D A A  WY RAA   +A 
Sbjct: 95  WGRQRDTTMAVYWYRLAASRGLDWGMYNLANLMMSGAGVDVDRATALSWYRRAADMGHAK 154

Query: 174 ARQAL 178
           +   L
Sbjct: 155 SINVL 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.127    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,354
Number of extensions: 25859
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)