BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0125.p
         (131 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309792|ref|YP_003773884.1| hypothetical protein Hsero_0451...   137   3e-34

>gi|300309792|ref|YP_003773884.1| hypothetical protein Hsero_0451
           [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  137 bits (345), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 82/99 (82%), Gaps = 1/99 (1%)

Query: 34  ELQTLEEGEPPAVTIKKPGEE-QGSGNSITERRDHGQTKEVKVKSGPSTYYVKPTQQLGS 92
           EL+ LEEGEPPAVTI+KPGE+ +  GNSI E+RDHGQ KE++VKSGPSTYY++P Q +GS
Sbjct: 47  ELEKLEEGEPPAVTIRKPGEDSRNQGNSIKEQRDHGQVKEIEVKSGPSTYYLRPNQNVGS 106

Query: 93  STPGDVQSGPPSGAQWQIKEFDWGGKKKAKEGEAGDASK 131
           STPGD QSGPP+ AQW++ EFDWG KK  +EG+   A+K
Sbjct: 107 STPGDAQSGPPTSAQWKVGEFDWGVKKPQQEGQTEGAAK 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.304    0.125    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 372,290
Number of extensions: 13947
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 56
Effective length of database: 1,264,745
Effective search space: 70825720
Effective search space used: 70825720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 125 (52.8 bits)