BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0123.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309790|ref|YP_003773882.1| membrane protein [Herbaspirillu...   358   e-100

>gi|300309790|ref|YP_003773882.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  358 bits (919), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/265 (68%), Positives = 220/265 (83%), Gaps = 2/265 (0%)

Query: 1   MEKLPAKTGWLWVKEGLALFRKQPAEVSTLFLSYMFLMLALGILPIIGQLLPLILVPVFA 60
           MEK+PA TGW WVK+G ALFRKQPAE+STLFL+YMFLMLALGI+P++GQ+LPLIL+P+FA
Sbjct: 1   MEKIPAHTGWSWVKQGFALFRKQPAEISTLFLAYMFLMLALGIIPVLGQMLPLILIPLFA 60

Query: 61  MSFMQACRQIEEGKRVYPSLLLVGFRSPALRTLLVLGVLYLLAAFAAVAVSTLVDGGAFW 120
           MSFMQAC QIE+G+RVYP+LLLVGFRSPA  TLL LG+LYLL A   VA S L DGGAFW
Sbjct: 61  MSFMQACAQIEKGERVYPNLLLVGFRSPARNTLLKLGLLYLLVATLVVAASALADGGAFW 120

Query: 121 KAMTGPGLDPKDIEGS--NLRLAMIVAALVYIPAAMAFWFAAPLIAWHKMPLGKALFYSF 178
           KAM G GL  K++E +  ++R+AM+VAA +Y+PAAMAFW+AAPLI W +MPLGKALFYSF
Sbjct: 121 KAMMGGGLSTKELESAAGSMRIAMLVAAALYVPAAMAFWYAAPLIMWQQMPLGKALFYSF 180

Query: 179 FAVRRAAKAFTVYGLAWLVIGVLLPATISTIVALLFNNMTVIVFILLPLSIILTVVMYCS 238
           F VRRA  AF VYGLAW+VI +++P+ IS ++ LL  + + + FILLP+SIILTVVMYCS
Sbjct: 181 FTVRRAGGAFLVYGLAWIVIAIVVPSVISMVITLLTGSFSAVFFILLPISIILTVVMYCS 240

Query: 239 FYPTYTAVFGKPPRDEAPVPVSDDS 263
           FYPTYT VFGKP R    +P S D+
Sbjct: 241 FYPTYTTVFGKPRRGSDSLPHSGDN 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 716,061
Number of extensions: 24213
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)