BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0122.p (520 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 756 0.0 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 560 e-160 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 385 e-108 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 342 3e-95 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 330 1e-91 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/520 (71%), Positives = 435/520 (83%) Query: 1 MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60 MRMN+PVT E L DGK+IVSKTDLKGNITYVNPYFIE+SGF E EL+GAPQN++RHPD Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPAEAFADMWKTVKKGIPWTGLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSR 120 MPAEAFADMW T+K G PWTGLVKNR K GDHYWV AN+TP+RE GQ++GYMSVRTKP R Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 QDVAGAEKLYADLRKGKAKGIAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQ 180 VAGAEKLYA +R+G+AKGIA+ +G VVRTGL GW+ KL ++QLN+R+NLSM +L +Q Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180 Query: 181 LVAASVSFLTDHSMLNTGICIATMLITLYIWYALHSALVRPIQAALLATYAITGGDLSNR 240 L H + + A L+++ W AL +AL++P+ AL T+AITGGDLS R Sbjct: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240 Query: 241 AESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRTESQAS 300 E+ RHDE+GRLLR+LRQMN+NLTAIIGDVRSNVE+I ATREIA+GN+DLS RTE+QA+ Sbjct: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300 Query: 301 NLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEISASSKK 360 NLEETASSM +LA+TVRQNAD A+QAN LA +ASAIA++GGD VA TG+TM+EIS SS K Sbjct: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360 Query: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKTL 420 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK L Sbjct: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420 Query: 421 IEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQAVTDM 480 I+ SVEKVDIGNR V+ A +TM +IV SV+RV+GIM EI ATQQQS GI QVH+A+T M Sbjct: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480 Query: 481 DESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFKFQHQ 520 D STQQNA+LVE+AAAAAGSL+EQT RLLQAISVFKF + Sbjct: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust. Identities = 305/524 (58%), Positives = 388/524 (74%), Gaps = 5/524 (0%) Query: 1 MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60 MR NLP+T E L+DGKSIVSKTDL+GNI YVNPYFIE+SGF EEEL+GAPQNIVRHP+ Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPAEAFADMWKTVKKGIPWTGLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSR 120 MP EAFADMW T+K+G+PW GLVKNR K GD+YWV AN+TPVRE G+ +GYMSVRT+PSR Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 QDVAGAEKLYADLRKGKAKGIAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQ 180 + V AE Y G+A+G+ + +G VVRTGL GW+ L ++ + R+ +M L + Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 181 LVAASVSFLTDHSMLNTGICI-----ATMLITLYIWYALHSALVRPIQAALLATYAITGG 235 ++ +V+ S + + A L+ L W LH+++V P+Q A+ A + + GG Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 236 DLSNRAESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRT 295 DL + ++ ++G LL+AL+Q+N+NL AIIGDVR NVES+ +T EIA GNMDLS RT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 296 ESQASNLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEIS 355 E+QAS LEETASS+E+ A TVRQNADSA A++ A SASAIA +GG V + G TM EI Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 356 ASSKKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAK 415 A+S KIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 416 EIKTLIEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQ 475 +IK LI+DS KV+ GN+LV + M E+ +V+ + M EITVA+ +QS GI Q++Q Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 476 AVTDMDESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFKFQH 519 AV +DE+TQQNAALVEQAAAAA +L +Q +L QA+SVFK + Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISY 524 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/496 (44%), Positives = 310/496 (62%), Gaps = 5/496 (1%) Query: 21 VSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPDMPAEAFADMWKTVKKGIPWT 80 +S TD +TY N F+EVSGFH E+L+G P NIVRHPDMP EAFADMW T+++G WT Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 81 GLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSRQDVAGAEKLYADLRKGKAKG 140 +VKNRR G HYWV AN+TP+R G + G++SVRT+P+ ++ A LY R+G+A+G Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 141 IAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQLVAASVSFLTDHSMLNTGIC 200 + G VVR+GL GW +L ++ L R L + G L A + L + Sbjct: 121 LRFCHGLVVRSGLLGWT-RLEQV-LPVRWRLRLALAAG-GLTALAGGILAGAPLAPMAAS 177 Query: 201 IATMLITLYIWYALHSALVRPIQAALLATYAITGGDLSNRAESGRHDEIGRLLRALRQMN 260 + L +W L L P++ L A+ G + R DEIG LLRA+ Q Sbjct: 178 VLPPLALACLW--LERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRAVNQSG 235 Query: 261 INLTAIIGDVRSNVESINGATREIATGNMDLSHRTESQASNLEETASSMEQLATTVRQNA 320 +NL A+I DV + V+ + A+R+IA+ N DL RT + L++TAS+ EQ+AT VR +A Sbjct: 236 LNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATAVRHSA 295 Query: 321 DSALQANQLAASASAIAVKGGDVVAKTGSTMSEISASSKKIVDIISLIDSIAFQTNILAL 380 DSA A+ A S A +G D+V + TM +I+ +S +I +I LIDSIAFQTNILAL Sbjct: 296 DSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQTNILAL 355 Query: 381 NAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKTLIEDSVEKVDIGNRLVDDARN 440 NAAVEAARAGE GRGFAVVA+EVR+LAQRSA AA+EIK LI SV + G + + A Sbjct: 356 NAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRAEQAAA 415 Query: 441 TMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQAVTDMDESTQQNAALVEQAAAAAGS 500 + IV + ++ ++ I+ + +QS G++QV Q+ +D TQQNAA+VE +AAA + Sbjct: 416 AIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSAAAVAA 475 Query: 501 LEEQTGRLLQAISVFK 516 ++++ L QA++VF+ Sbjct: 476 MQQRMQTLQQAVAVFE 491 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 342 bits (878), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 200/332 (60%), Positives = 250/332 (75%), Gaps = 1/332 (0%) Query: 188 FLTDHSMLNTGICIATMLITLYIWYALHSALVRPIQAALLATYAITGGDLSNRAESGRHD 247 + + SML I +L W L ++ RP+ A+ + GDL++R +S D Sbjct: 183 YRSGRSMLLALGAIEIVLGAALAWL-LTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRD 241 Query: 248 EIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRTESQASNLEETAS 307 E G+LL AL+ MN NL I+G VR E+IN A+REIATGN+DLS RTE+QA +LEETAS Sbjct: 242 ETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETAS 301 Query: 308 SMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEISASSKKIVDIISL 367 +MEQL +TV+QNAD+A QAN+LAASAS +A +GG VV + +TM I ASS+KI DII + Sbjct: 302 AMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGV 361 Query: 368 IDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKTLIEDSVEK 427 ID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSVEK Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEK 421 Query: 428 VDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQAVTDMDESTQQN 487 VD G+RLV A +TM E+V+SV RVT ++ EIT+A+Q+QS GI QV+ A+T +DE+TQQN Sbjct: 422 VDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQN 481 Query: 488 AALVEQAAAAAGSLEEQTGRLLQAISVFKFQH 519 AALVEQAAAAA S+++Q L A+SVF+ + Sbjct: 482 AALVEQAAAAARSMQDQAASLTDAVSVFRLED 513 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 330 bits (847), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 193/343 (56%), Positives = 249/343 (72%), Gaps = 3/343 (0%) Query: 180 QLVAASVSFLTDHSM---LNTGICIATMLITLYIWYALHSALVRPIQAALLATYAITGGD 236 QL A + D +M + +A +L + + Y + ++V+P+ A+ + GD Sbjct: 176 QLQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGD 235 Query: 237 LSNRAESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRTE 296 L+ R E DE G+L++ALR+MN NL I+ VR ESI A+ EIA+GN+DLS RTE Sbjct: 236 LTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTE 295 Query: 297 SQASNLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEISA 356 QA +LEETAS+ME++ +TVRQNAD+A QANQ+A SAS IA++GG +V + TM EI+ Sbjct: 296 QQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQ 355 Query: 357 SSKKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKE 416 SS+KIVDII +ID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKE Sbjct: 356 SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKE 415 Query: 417 IKTLIEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQA 476 IK LI DSV KV+ G+ LV A TM ++V SV+ VT I+ EI+ A+ +QS GI ++++A Sbjct: 416 IKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRA 475 Query: 477 VTDMDESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFKFQH 519 VT MDE TQQNAALVEQAAAAA S++EQ RL Q+IS+FK + Sbjct: 476 VTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ 518 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,249,548 Number of extensions: 45681 Number of successful extensions: 439 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 69 Length of query: 520 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 431 Effective length of database: 1,198,455 Effective search space: 516534105 Effective search space used: 516534105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)