BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0119.p (503 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309787|ref|YP_003773879.1| sugar (pentulose and hexulose) ... 766 0.0 gi|300312696|ref|YP_003776788.1| D-xylulose kinase [Herbaspirill... 484 e-138 gi|300310425|ref|YP_003774517.1| gluconokinase [Herbaspirillum s... 157 2e-39 gi|300310306|ref|YP_003774398.1| glycerol kinase [Herbaspirillum... 111 1e-25 gi|300310399|ref|YP_003774491.1| D-ribulose/ribitol kinase [Herb... 81 2e-16 >gi|300309787|ref|YP_003773879.1| sugar (pentulose and hexulose) kinase [Herbaspirillum seropedicae SmR1] Length = 490 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/488 (81%), Positives = 425/488 (87%), Gaps = 3/488 (0%) Query: 11 MYLGIDLGTSEVKAVVIDAEGKLLALAGSPLTVSRPHPRWSEQDPQHWWRAAGDTVASLR 70 MYLGIDLGTSEVKAVVIDA+G L+ALAGS L V+RPHPRWSEQ P WW+A DTVA LR Sbjct: 1 MYLGIDLGTSEVKAVVIDAQGSLVALAGSTLNVARPHPRWSEQAPADWWQATCDTVAKLR 60 Query: 71 EQLGAERFAGIRAIGLSGQMHGAVLLDAQDRVLRPAILWSDSRSTDECAELTRRWNESGD 130 QLG+ERF IRAIGLSGQMHGAVLLD +D VLRPAILWSDSRS ECAEL R + Sbjct: 61 TQLGSERFGSIRAIGLSGQMHGAVLLDERDEVLRPAILWSDSRSAPECAELESR---APR 117 Query: 131 LHQRAGNLAMPGFTAPKLLWVARHEPQLFAEVACVLLPKDWLRLQMTGRKISDPSDAAGT 190 LH AGNLAMPGFTAPKLLWVARHEPQLFA +A VLLPKDWLRL+MTGRK+SDPSDAAGT Sbjct: 118 LHGIAGNLAMPGFTAPKLLWVARHEPQLFARIATVLLPKDWLRLKMTGRKVSDPSDAAGT 177 Query: 191 LWLDVAQRDWSDALLAAGGMRRGQMPDLADGSAAAGFLLPEVARDWGLADDVVVAGGAGD 250 LWLDV R+WSD LLAA GMRR QMP L DGSA +G LLPEVA+ WGL DV+VAGGAGD Sbjct: 178 LWLDVEGRNWSDELLAASGMRRDQMPALVDGSAVSGSLLPEVAQAWGLRSDVIVAGGAGD 237 Query: 251 GAASAVGIGAVRPGDGFLSLGTSGVLFVVNDKFRPNPARAIHAFCHTLPQRWHQMSVMLS 310 GAASAVGIGAV+PGDGFLSLGTSGVLFVVND+FRPNP RAIHAFCHTLPQRWHQMSVMLS Sbjct: 238 GAASAVGIGAVKPGDGFLSLGTSGVLFVVNDRFRPNPGRAIHAFCHTLPQRWHQMSVMLS 297 Query: 311 AASCLRWFCRLCSVDEKTLLQEVAALDDEALANAPLFLPYLSGERTPHNDPYALGVFHGL 370 AASCLRWFCRLCSVDEK+LL E+ LD++A NAPLFLPYLSGERTPHNDPYA GVFHGL Sbjct: 298 AASCLRWFCRLCSVDEKSLLAEIEQLDEQACNNAPLFLPYLSGERTPHNDPYATGVFHGL 357 Query: 371 SHEHQRAALAYAVLEGVSFGMVDGLDALRAAGTDVQQLSLVGGGARSAYWAQLLSDALDV 430 + EHQRAAL YAVLEGV+FGMVDGLDALRAAGTDV +LSLVGGGARSAYWAQLL+DAL V Sbjct: 358 TPEHQRAALGYAVLEGVAFGMVDGLDALRAAGTDVAELSLVGGGARSAYWAQLLADALQV 417 Query: 431 RIVTHVGSEAGGALGAARLAWLADGGSEEMVCRKPPQQDCYEPRRARHAQLQPRLQRYRH 490 RIVTHVGSEAGGALGAARLAWLADGG E VCRKP QQ Y+P ARHA LQ RLQRYR Sbjct: 418 RIVTHVGSEAGGALGAARLAWLADGGDEAEVCRKPAQQALYQPDPARHAALQARLQRYRA 477 Query: 491 IYQPWEPL 498 IY P+ PL Sbjct: 478 IYAPFAPL 485 >gi|300312696|ref|YP_003776788.1| D-xylulose kinase [Herbaspirillum seropedicae SmR1] Length = 493 Score = 484 bits (1245), Expect = e-138, Method: Compositional matrix adjust. Identities = 257/483 (53%), Positives = 323/483 (66%), Gaps = 5/483 (1%) Query: 12 YLGIDLGTSEVKAVVIDAEGKLLALAGSPLTVSRPHPRWSEQDPQHWWRAAGDTVASLRE 71 YLGIDLGTSEVK V+ D + ++A + L V PHP WSEQ PQ WW A D +A+LR Sbjct: 3 YLGIDLGTSEVKLVLTDEDSNVIASTSARLRVDNPHPLWSEQAPQSWWNATLDAIAALRT 62 Query: 72 QLGAERFAGIRAIGLSGQMHGAVLLDAQDRVLRPAILWSDSRSTDECAELTRRWNESGDL 131 Q + F +R IGLSGQMHGA LLD VLRPAILW+D R+ EC EL ++ + Sbjct: 63 Q-APQAFQALRGIGLSGQMHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDAVAI 121 Query: 132 HQRAGNLAMPGFTAPKLLWVARHEPQLFAEVACVLLPKDWLRLQMTGRKISDPSDAAGTL 191 GN AMPGFTAPKLLW++++EP ++ + VLLPKD+L ++TG +S+ SDAAGTL Sbjct: 122 ---TGNRAMPGFTAPKLLWLSKYEPAVYRAIDKVLLPKDFLGWKLTGEFVSEMSDAAGTL 178 Query: 192 WLDVAQRDWSDALLAAGGMRRGQMPDLADGSAAAGFLLPEVARDWGLADDVVVAGGAGDG 251 WLDVA+RDWS+ +L A G+ R MP L +GSA AG L E+ R+WG++ VVVAGGAGD Sbjct: 179 WLDVARRDWSERMLGATGLDRSHMPRLVEGSAVAGQLRDELRREWGISGPVVVAGGAGDN 238 Query: 252 AASAVGIGAVRPGDGFLSLGTSGVLFVVNDKFRPNPARAIHAFCHTLPQRWHQMSVMLSA 311 AASAVGIG +R GD FLSLG+SGVLF PN + +HAFCH LP +WHQMSV+LSA Sbjct: 239 AASAVGIGVIRAGDAFLSLGSSGVLFAATAHHAPNAQQGVHAFCHCLPGQWHQMSVILSA 298 Query: 312 ASCLRWFCRLCSVDEKTLLQEVAALDDEALANAPLFLPYLSGERTPHNDPYALGVFHGLS 371 A+ L W + + L+ L A APLFLPYL+GERTPHND A GV G++ Sbjct: 299 AASLHWLSGVTARPVAELVSGAERLSAGQQAQAPLFLPYLNGERTPHNDAAAKGVLFGMT 358 Query: 372 HEHQRAALAYAVLEGVSFGMVDGLDALRAAGTDVQQLSLVGGGARSAYWAQLLSDALDVR 431 H+ A LAYAV+EGV+F M DG AL+AAGT ++ + VGGG+RSA+W L + AL + Sbjct: 359 PAHESAHLAYAVMEGVAFAMADGYAALQAAGTTLESAAFVGGGSRSAFWGVLCATALGIP 418 Query: 432 IVTHVGSEAGGALGAARLAWLADGGSEEM-VCRKPPQQDCYEPRRARHAQLQPRLQRYRH 490 + H G+E G ALGAARL LA G + VC P + Y P AR AQLQ RL +YR Sbjct: 419 LRRHAGAEVGAALGAARLGRLARTGEDAASVCIPPEVLEWYRPDAARQAQLQRRLAQYRR 478 Query: 491 IYQ 493 +Y+ Sbjct: 479 LYR 481 >gi|300310425|ref|YP_003774517.1| gluconokinase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 213/452 (47%), Gaps = 19/452 (4%) Query: 13 LGIDLGTSEVKAVVIDAEGKLLALAGSPLTVSRPHPRWSEQDPQHWWRAAGDTVASLREQ 72 LG+D+GT+ K+VV +GK++A V P +EQDP+ AA ++A + Sbjct: 11 LGVDIGTTSTKSVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALASIAGAVKA 70 Query: 73 LGAERFAGIRAIGLSGQMHGAVLLDAQDRVLRPAILWSDSRSTDECAELTRRWNESGDLH 132 A I + S MH + LDA++R+L +I W D R++ AE + ++ ++ Sbjct: 71 AKAAP-QEIALLSFSAAMHSVIALDAENRLLSNSITWGDIRAS-VWAERIKHEHDGNAIY 128 Query: 133 QRAGNLAMPGFTAPKLLWVARHEPQLFAEVACVLLPKDWLRLQMTGRKISDPSDAAGTLW 192 +R G P KL+W+ +P +F A + K++L Q+ G+ + D S A+ T Sbjct: 129 RRTGTPVHPMSPLCKLMWMRHEKPDVFHRAARFVGIKEYLLYQLFGQWVVDHSIASATGM 188 Query: 193 LDVAQRDWSDALLAAGGMRRGQMPDLADGSAAAGFLLPEVARDWGLADDVVVAGGAGDGA 252 ++ + W LA G+R Q+P + L E+A+ GL+ D GA DG Sbjct: 189 FNLRELAWDQGALALLGVRPDQLPTPVPTTHRLPALSSEMAQRLGLSVDTPFIIGANDGV 248 Query: 253 ASAVGIGAVRPGDGFLSLGTSGVLFVVNDKFRPNPARAIHAFCHTLPQR-WHQMSVMLSA 311 S +G+ A+ G +++GTSG + V D+ R +P + FC+ L ++ W + + Sbjct: 249 LSNLGVNAIEIGHVAVTIGTSGAMRTVIDEPRTDPQGRL--FCYALTEKHWVVGGPVNNG 306 Query: 312 ASCLRWF-----------CRLCSVDEKTLLQEVAALDDEALANAPLFLPYLSGERTPHND 360 + RW R VD L +A A LF P+++GER P + Sbjct: 307 GNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPG-AEGLLFHPFMAGERAPLWN 365 Query: 361 PYALGVFHGLSHEHQRAALAYAVLEGVSFGMVDGLDALRAAGTDVQQLSLVGGGARSAYW 420 G F GL+ H + + A LEGV F + L AL +++ GG ARSA W Sbjct: 366 ADLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSALW 425 Query: 421 AQLLSDALDVRIVTHVGSEAGGALGAARL-AW 451 Q+++D + +V E+ LGAA L AW Sbjct: 426 RQMMADIFNREVVVPESVES-SCLGAAVLGAW 456 >gi|300310306|ref|YP_003774398.1| glycerol kinase [Herbaspirillum seropedicae SmR1] Length = 495 Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 126/492 (25%), Positives = 221/492 (44%), Gaps = 27/492 (5%) Query: 13 LGIDLGTSEVKAVVIDAEGKLLALAGSPLTVSRPHPRWSEQDPQHWWRAAGDTVASLREQ 72 L +D GTS ++++ D G ++A A P P W E DP W + T + Q Sbjct: 5 LALDQGTSSSRSIIFDQSGAIVATAQQEFPQIFPQPGWVEHDPMDLWHSQLQTAQKVLAQ 64 Query: 73 LGAERFAGIRAIGLSGQMHGAVLLD-AQDRVLRPAILWSDSRSTDECAELTRRWNESGDL 131 G + + + A+G++ Q V+ + A + + A++W D R+ CA L R + Sbjct: 65 SGI-KASELTALGITNQRETTVVWERATGKPVYNAVVWQDRRAEVVCAALRER-GLGEAI 122 Query: 132 HQRAGNLAMPGFTAPKLLWVARHEPQL--FAEVACVLLPK--DWLRLQMTGRK--ISDPS 185 ++ G + P F+ KL W+ H L AE +L WL +TG + +SD S Sbjct: 123 QKKTGLVLDPYFSGTKLRWILDHVDGLRARAERGELLFGTVDSWLVWNLTGGRLHVSDVS 182 Query: 186 DAAGTLWLDVAQRDWSDALLAAGGMRRGQMPDLADGSAAAGFLLPEVARDWGLADDVVVA 245 +A+ T+ ++ W + LL G+ +P + + G + + L V + Sbjct: 183 NASRTMLWNIHTGAWDEELLQWLGIPAAMLPQVQPSAHLYGEIDAQ-----HLGAAVKIG 237 Query: 246 GGAGDGAASAVGIGAVRPGDGFLSLGTSGVLFV-VNDKFRPNPARAIH-AFCHTLPQRWH 303 G AGD ++ G VRPG + GT + + D+ + I A C Q+ + Sbjct: 238 GIAGDQQSALFGQACVRPGMAKNTYGTGCFMLLHTGDQCATSHNGLISTAACQVDEQKQY 297 Query: 304 QM--SVMLSAASCLRWFCR-LCSVDEKTLLQEVAALDDEALANAPLFLPYLSGERTPHND 360 + SV + A ++W L ++ T ++ +A ++ + +F+P +G P+ + Sbjct: 298 ALEGSVFIGGA-VVQWLRDGLKAIKTSTDVEGLACSVED--SGGVVFVPSFTGLGAPYWN 354 Query: 361 PYALGVFHGLSHEHQRAALAYAVLEGVSFGMVDGLDAL-RAAGTDVQQLSLVGGGARSAY 419 P A G GLS A +A A LE ++F L+A+ R A + + +L + GG A + Sbjct: 355 PSAKGAIVGLSRGSTVAHIARAALESIAFQSTALLNAMVRDAVSPITELRVDGGAAANNL 414 Query: 420 WAQLLSDALDVRIVTHVGSEAGGALGAARLAWLADGGSEEM--VCRKPPQQDCYEPRRAR 477 Q +D L + ++ +E ALGAA LA +A G ++ + + + +EP R Sbjct: 415 LLQFQADLLGIPVIRPQVTET-TALGAAYLAGIATGVYRDLSELSSQWRMEHTFEPSIGR 473 Query: 478 HAQLQPRLQRYR 489 Q Q R+ + Sbjct: 474 D-QAQARIHAWE 484 >gi|300310399|ref|YP_003774491.1| D-ribulose/ribitol kinase [Herbaspirillum seropedicae SmR1] Length = 548 Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 127/490 (25%), Positives = 184/490 (37%), Gaps = 51/490 (10%) Query: 10 TMYLGIDLGTSEVKAVVIDAEGKLLALAGSPLTVSRPHPRWS-EQDPQHWWRAAGDTVAS 68 T +GID+GT +A V D +G+LLA A + + R R EQ W A V + Sbjct: 3 TYLIGIDVGTGSARAGVFDPQGQLLASARHDIDLFRDERRARVEQSSAQIWEAVCQAVRA 62 Query: 69 LREQLGAERFAGIRAIGLSGQMHGAVLLDAQDRVLRP------AILWSDSRSTDECAELT 122 + G + A + IG+ V+ A V P I+W D R+ ++ + Sbjct: 63 AVTKSGIDP-AAVAGIGVDATC-SLVVQGASAGVGDPGHPERDVIVWMDHRALEQAQRIN 120 Query: 123 RRWNESGDLHQRAGNLAMPGFTAPKLLWVARHEPQLFAEVACVLLPKDWLRLQMTGRKIS 182 R + + G + P PKLLW+ + P+++A A D+L + TG + Sbjct: 121 RMGHA---VLSYVGGVISPEMETPKLLWLKENLPEVYASAAHFFDLTDFLTWKATG-SLQ 176 Query: 183 DPSDAAGTLWLDVAQRDWSDAL---------LAAGGMRRGQMPDLADGSAAAGFLLPEVA 233 S W +A DA LA G R + G+ AG L A Sbjct: 177 RSSCTVTCKWTYLAHEAGWDASYFRQIGLGDLAEAGFARIGAEVVWPGTPLAGGLTQTAA 236 Query: 234 RDWGLADDVVVAGGAGDGAASAVGIGAVRPGDG------FLSLGTSGVLFVVNDKFRPNP 287 + GL + VA G D A VG A R G G GTS + P Sbjct: 237 QAMGLRPGIAVAAGLIDAHAGGVGTVAARGGQGDAAACMAYVFGTSSCTMTSHADPVLVP 296 Query: 288 ARAIHAFCHTLPQRWHQMSVMLSAASCLRWFCRLCSVDEKT---------------LLQE 332 + P W +A + + RL + Q Sbjct: 297 GVWGPYYKAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQAREEAARAQMELPQWLAQQA 356 Query: 333 VAALDDEA----LANAPLFLPYLSGERTPHNDPYALGVFHGLSHEH---QRAALAYAVLE 385 +AA+D + LA +P G R+P DP A GL EH AL A L Sbjct: 357 LAAVDHPSEAVWLAGQLTVVPEFLGNRSPLADPQARAALVGLGMEHDIDSLVALYVAGLC 416 Query: 386 GVSFGMVDGLDALRAAGTDVQQLSLVGGGARSAYWAQLLSDALDVRIVTHVGSEAGGALG 445 + +G+ ++A A G VQ +S+ GG QLL+DA + + E LG Sbjct: 417 SLGYGLRQIIEAQAACGVRVQSISVSGGAGVHPLTRQLLADATGMPVEITASPEP-VLLG 475 Query: 446 AARLAWLADG 455 +A LA +A G Sbjct: 476 SAMLAAVAAG 485 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,637,097 Number of extensions: 68960 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 231 Number of HSP's successfully gapped: 5 Length of query: 503 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 414 Effective length of database: 1,198,455 Effective search space: 496160370 Effective search space used: 496160370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)