BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0118.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase [H...   313   7e-87

>gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  313 bits (802), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 145/207 (70%), Positives = 168/207 (81%)

Query: 3   LEKVGVEMVASVLPYEEAKIRILNASHSCIAWAGTMIGLDYIHEGTVHEDIRRMAYDYIT 62
           LE+ GVEMV SVLPYEEAKIRILNASHSCIAWAGT+ GL YIHEGT+ +DIR+MAYDY+T
Sbjct: 271 LEEAGVEMVQSVLPYEEAKIRILNASHSCIAWAGTLAGLQYIHEGTLRDDIRQMAYDYVT 330

Query: 63  QDVIPCLTPSPLDLEAYRDMTLARFANPAIQDTNQRVAADGFSKIPGFILPTIADSLGRG 122
           QDVI CLTPSP+DL AYRD TLARF+NPAIQDTNQRVAADG+SKIPGFI PT+ +S+  G
Sbjct: 331 QDVIACLTPSPIDLAAYRDTTLARFSNPAIQDTNQRVAADGYSKIPGFIRPTLQESMAAG 390

Query: 123 HQPHATAQVAALFFAFLQRWRRGELAYEYQDGVFDPTAVRAMLESPDPVRAYCHDPLLWG 182
             P ATA + ALF  FLQRW  G+L YEYQDG+FDP AVR ML + DPV+A+C D +LWG
Sbjct: 391 RDPRATAMLPALFLVFLQRWNAGQLPYEYQDGIFDPAAVRTMLGAADPVQAFCADAVLWG 450

Query: 183 ELAGSIQLERLLREGIVVVNAWLAAST 209
           ELAG  +L +L+RE +  V  WL A  
Sbjct: 451 ELAGDARLTKLVREAVQRVQQWLGAGN 477


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,800
Number of extensions: 27495
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)