BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0117.p (371 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 608 e-175 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 390 e-110 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 375 e-105 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 340 1e-94 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 335 3e-93 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 608 bits (1569), Expect = e-175, Method: Compositional matrix adjust. Identities = 298/362 (82%), Positives = 324/362 (89%) Query: 1 MAAVTIRNLAKRYDDNEVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIAGLEDISAGEL 60 MAAV+IRNLAKRYDDNEVMRDINL+I+DGEFVVFVGPSGCGKSTLLRMIAGLE+IS G+L Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 NIGERRMNDVPAAKRGIAMVFQSYALYPHMTLYDNMAFGLKIAGKSKTEIDSAVQHAAKI 120 +IG RRMN+VPA+KRG+AMVFQSYALYPHM+LYDNMAFGLKIAGKSK EID+AVQHAAKI Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFSKLH 180 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF+KLH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 EDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGTPQQLYHHPANRFVAGFIGSPKMN 240 +DLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVG+PQQLYHHPANRFVAGFIGSPKMN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 FIDGVIAGIGPDGVLVHLPGGGRQLAAVEAGTLKVGDKVTLGIRPEHLAIVTEQPMLQAH 300 FIDG +A I DGV V LPGGG Q AAV+ TL+VG KVTLG+RPEHL I Q LQA Sbjct: 241 FIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQAALQAR 300 Query: 301 YTALELLGDFSYLYAAADASDEPLILRVPDTLQLASRSVIGVGAEAHRCHLFREDGSAVT 360 TALELLGDFSYLYAA + S++ LILRVPD+L SV+ + A+ RCHLF DG A+ Sbjct: 301 CTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQALP 360 Query: 361 RL 362 RL Sbjct: 361 RL 362 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 390 bits (1003), Expect = e-110, Method: Compositional matrix adjust. Identities = 207/364 (56%), Positives = 252/364 (69%), Gaps = 5/364 (1%) Query: 1 MAAVTIRNLAKRYDDN-EVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIAGLEDISAGE 59 MA V I+ L K YD +V+ +NLDI DGEF V VGPSGCGKSTLLRM+ GLE+IS GE Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 LNIGERRMNDVPAAKRGIAMVFQSYALYPHMTLYDNMAFGLKIAGKSKTEIDSAVQHAAK 119 L IG + +N +P A+RGIAMVFQSYALYPHM +Y NMAFGLK+AG SK++ID+ ++HAA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFSKL 179 IL IDHLL R PR LSGGQRQRVAIGRAI RQP +FLFDEPLSNLDAALRV+ RLE +KL Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 HEDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGTPQQLYHHPANRFVAGFIGSPKM 239 H L T++YVTHDQ+EAMTL DKIVV+ EGRI+Q GTP +LY P N FVAGFIGSPKM Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 240 NFIDGVIAGIGPDGVLVHLPGGGRQLAAVEAGTLKVGDKVTLGIRPEHL--AIVTEQPML 297 NF GV+ GV V + GG R LA V+ + G VTLG+R E + + QP L Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQP-L 299 Query: 298 QAHYTALELLGDFSYLYAAADASDEPLILRVPDTLQLASRSVIGVGAEAHRCHLFREDGS 357 +E LG+ ++LY D + +++R + I + +H HLF G Sbjct: 300 HGVVNLVEHLGEANFLYVTLDGGHD-IVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQGQ 358 Query: 358 AVTR 361 A+ R Sbjct: 359 ALRR 362 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/380 (50%), Positives = 263/380 (69%), Gaps = 11/380 (2%) Query: 1 MAAVTIRNLAKRYDDNE-VMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIAGLEDISAGE 59 MA++T+R K Y D V+R+++LDI + EF VF+GPSGCGKSTLLR IAGLED+++G+ Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 LNIGERRMNDVPAAKRGIAMVFQSYALYPHMTLYDNMAFGLKIAGKSKTEIDSAVQHAAK 119 L IG +R+NDVP+A+R +AMVFQSYAL+PHMT+Y+NM+FGL +A K EI+ V+ AA+ Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFSKL 179 IL ++ LL RKP+ LSGGQRQRVAIGRAI R+P VFLFDEPLSNLDA LR + R+E ++L Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 180 HEDL-KTTMIYVTHDQIEAMTLADKIVVLSE-------GRIEQVGTPQQLYHHPANRFVA 231 H + +++YVTHDQ+EAMTLAD+IV+L G I QVGTP +LYHHP NRFVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 232 GFIGSPKMNFIDGVIAGIGPDGVLVHLPGGGRQLAAVEAGTLKVGDKVTLGIRPEHLAIV 291 GFIGSP+MNF+ +AG+ +G+LV L G L G L+ G VT+G+RPEH+ I Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIG 300 Query: 292 TE-QPMLQAHYTALELLGDFSYLYAAADASDEPLILRVPDTLQLASRSVIGVGAEAHRCH 350 ++ Q + +E LG+ +Y++ A +PL+ + ++ + V + Sbjct: 301 SQGQYGIHREVVLVERLGEQTYVHLDEPAG-QPLVAKAAGDARITRGERVRVAIAPACAY 359 Query: 351 LFREDGSAVTRLLRDPAMAV 370 LF +DG A+TR +AV Sbjct: 360 LFDQDGLALTRTQVQGGLAV 379 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 340 bits (872), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 182/360 (50%), Positives = 238/360 (66%), Gaps = 13/360 (3%) Query: 1 MAAVTIRNLAKRYDDN----EVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIAGLEDIS 56 MAA+ ++ + K Y +V+ I+ +I DGEF+V VGPSGCGKSTLLRM+AGLE+IS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 AGELNIGERRMNDVPAAKRGIAMVFQSYALYPHMTLYDNMAFGLKIAGKSKTEIDSAVQH 116 +G++ IG+R +ND+ +R IAMVFQ+YALYPHMT+Y NMA+GLKI G SK+EID+ VQ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 AA IL + LL+R PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 SKLHEDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGTPQQLYHHPANRFVAGFIGS 236 KLH L+TT +YVTHDQ+EAMTL +++V++ G EQ+GTP ++Y PA FVA FIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PKMNFIDGVIAGIGPDGVLVHLPGGGRQ--LAAVEAGTLKVGDKVTLGIRPEHLAIVTE- 293 P MN + G ++ DG + G L + T G + LG+RPEHL + + Sbjct: 241 PPMNLLQGKLSA---DGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDG 297 Query: 294 -QPMLQAHYTALELLGDFSYLYAAADASDEPLILRVPDTLQLASRSVIGVGAEAHRCHLF 352 L +E LG + L A + L+LR P +Q+ + IG A H F Sbjct: 298 SAAQLSLEVELVEALG--AELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWF 355 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 335 bits (860), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 173/291 (59%), Positives = 209/291 (71%), Gaps = 2/291 (0%) Query: 1 MAAVTIRNLAKRYDDNEVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIAGLEDISAGEL 60 MA+V IR + K++ +++R +++DI DGEF V VGPSGCGKSTLLRM+AGLE+I+ GE+ Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 NIGERRMNDVPAAKRGIAMVFQSYALYPHMTLYDNMAFGLKIAGKSKTEIDSAVQHAAKI 120 IG +N+V R IAMVFQ+YALYPHMT+ DNMAF L +A K K +D V+ AA I Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFSKLH 180 L ++ LLDR PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLDA LRV+MR E +LH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 EDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGTPQQLYHHPANRFVAGFIGSPKMN 240 + LKTT IYVTHDQIEAMT+AD+IVV+ +G +EQ G P LY +PAN FVAGFIGSP MN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 FIDGVIAGIGPDGVLVHLPGGGRQLAAVEAGTL-KVGDKVTLGIRPEHLAI 290 FI + G V G R A A G KVT G+RPEHL+I Sbjct: 241 FIPATLRR-NATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSI 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,174,920 Number of extensions: 51842 Number of successful extensions: 576 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 355 Number of HSP's successfully gapped: 143 Length of query: 371 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 284 Effective length of database: 1,207,925 Effective search space: 343050700 Effective search space used: 343050700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)