BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0116.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [...   173   5e-45
gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...    74   6e-15

>gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  173 bits (438), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 99/133 (74%)

Query: 4   VPGIAEALQKIDLPKAVASNSSTDRIVKGLQRCDLLALFDGHIHSAHDVGRPKPAPHVYL 63
           VPG+ EALQ I LP+AVASNS   RI  GL+RC L   F G I+S HDV  PKPAP VYL
Sbjct: 109 VPGVVEALQAIRLPRAVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYL 168

Query: 64  AAAAGYGVAPQHCVAVDDSVTGVRAASSAGMRVLGFTGVAHDRHGMRQKLLDAGAELVFE 123
           AAAAG+GV P  CVAVDDSVTGVRAA +AGM VLGFTGVAHDR  M +KL DAGA  VFE
Sbjct: 169 AAAAGFGVDPSRCVAVDDSVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFE 228

Query: 124 DMQELPALIEALL 136
           DM+  P L+  L+
Sbjct: 229 DMKLFPQLVSELI 241


>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score = 73.6 bits (179), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 60/99 (60%)

Query: 1   VQLVPGIAEALQKIDLPKAVASNSSTDRIVKGLQRCDLLALFDGHIHSAHDVGRPKPAPH 60
           +Q + G  E ++++ +P A+ASN+   +I   L+   LL  F G I SA+DV R KP P 
Sbjct: 90  LQPINGALEMVEQLQIPFALASNAPHHKIELCLRVTGLLPHFHGRIFSAYDVQRWKPDPA 149

Query: 61  VYLAAAAGYGVAPQHCVAVDDSVTGVRAASSAGMRVLGF 99
           ++L AA   GV P  C  V+DS+ GV+A  +AGM+V+  
Sbjct: 150 LFLFAAERLGVPPARCAVVEDSLPGVQAGLAAGMKVIAL 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 403,299
Number of extensions: 14739
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)