BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0112.p (231 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 360 e-101 gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra... 72 4e-14 gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ... 68 7e-13 gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease ... 62 5e-11 gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease ... 61 9e-11 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 360 bits (923), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/219 (79%), Positives = 194/219 (88%), Gaps = 2/219 (0%) Query: 2 SSEASASTPSTQKSRR--GKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTVYF 59 S++ S+++P Q + + +R ++RF PIRL+QTP+V +L WMIVPLAMT+YF Sbjct: 6 STQVSSTSPMMQSTSQPASRRQQTSPPRKERFNPIRLMQTPSVLILLAWMIVPLAMTIYF 65 Query: 60 SFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPSIANTALLIGSVLCISVIGGTLLAVLFD 119 S NRYNLM+PDQTGFVGLENY FLL+DPAFWPSI NTALLIGSVL ISVIGGTLLAVLFD Sbjct: 66 SVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGNTALLIGSVLAISVIGGTLLAVLFD 125 Query: 120 QPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGMLAFVMRHLGMAPIDWLAEYPM 179 QPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYG+LA+VMRHLG+ PIDWLAEYPM Sbjct: 126 QPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPIDWLAEYPM 185 Query: 180 LSVIIIVSWQWIPFAFLILLTALQSLDGDQKEAAQLDGA 218 LSVIIIV+WQWIPFAFLILLTALQSLD DQKEAAQLDGA Sbjct: 186 LSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGA 224 >gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 71.6 bits (174), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 14/196 (7%) Query: 29 KRFLPIRLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTG----FVGLENYQFLL 84 ++LP LL P + + L+ P +Y S ++ D G FV +N++ L Sbjct: 9 SKWLP-YLLVAPQIIITLLFFFWPAVQALYQS-----MLLQDAFGGYSEFVWFDNFKTLF 62 Query: 85 EDPAFWPSIANTALLIGSVLCISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAA 144 DP + S TA+ V + LLAV D+ RG I + +I P+ V P V Sbjct: 63 GDPTYLESFRTTAIFSALVAFFGLALSLLLAVFADRVRRGASIYKTFLIWPYAVSPVVVG 122 Query: 145 LIWKNMIMHPVYGMLAFVMRHLGMAPIDWL--AEYPMLSVIIIVSWQWIPFAFLILLTAL 202 ++W ++ P G+L+ V+ LG+ P D++ + M+ ++I W+ I + FL L L Sbjct: 123 VLWM-FLLSPSLGILSHVLSWLGL-PWDYMINGTHAMILIVIAAIWKQISYNFLFFLAGL 180 Query: 203 QSLDGDQKEAAQLDGA 218 QS+ EAA +DGA Sbjct: 181 QSIPKSLIEAAAIDGA 196 >gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 67.8 bits (164), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 6/181 (3%) Query: 40 PAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPSIANTALL 99 PA + ++++ P+ T+Y SF ++ M+ + FVGL NY L P F+ ++ N L Sbjct: 44 PACVMTLVYVLYPILYTIYLSFFSWDGMTEPR--FVGLANYVELFHAPTFYTALKNNVLW 101 Query: 100 IGSVLCISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGML 159 + L +G +A+ +Q G + + L PF + V L++ + P +G+L Sbjct: 102 LLMFLLAPPMG-LAIALYLNQKVIGMRVVKSLFFAPFVLSGVVVGLMY-SWFYDPSFGLL 159 Query: 160 AFVMRHLGMAPIDWLAEYPMLSVIIIVSWQWIPFAFLILLTALQSLDGDQKEAAQLDGAP 219 + + P+ A Y +I W + ++ LT L +L+ DQ EAA+++GA Sbjct: 160 SLLFGQ--GVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARMEGAK 217 Query: 220 G 220 G Sbjct: 218 G 218 >gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 61.6 bits (148), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 12/177 (6%) Query: 36 LLQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPD---QTGFVGLENYQFLLEDPAFWPS 92 LL +PA+ LL + P T++ SF +P + FVGLENY+ + +DP FW + Sbjct: 12 LLLSPAMVLLIAFTHYPALATLWHSF----FSTPKGVRPSVFVGLENYRLMADDPVFWQA 67 Query: 93 IANTALLIGSVLCISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVA-ALIWKNMI 151 + N + +++ L+A+ ++ GRG+ RL P V+P +A A IW Sbjct: 68 LCNNLWFALGTIPLAIALAILMALWVNEKLAGRGVLRLAYFTP-TVLPMIAVANIWL-FF 125 Query: 152 MHPVYGMLAFVMRHLGMAPIDWLA--EYPMLSVIIIVSWQWIPFAFLILLTALQSLD 206 P YG+L + LG+ +WL + + +++++ W+ F + L ALQ + Sbjct: 126 YTPQYGLLEQITGALGLPSHNWLGNPQTVLGALMVVAVWKEAGFFMIFYLAALQQIS 182 >gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 60.8 bits (146), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 16/196 (8%) Query: 34 IRLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTGFVGLENYQFLLEDP----AF 89 + +L PAV + L+ +PL T+ F Y FVGL+NY+ +L DP AF Sbjct: 9 LAVLLAPAVLIYALFSALPLLDTLRLGF--YTANDAGVRSFVGLDNYRTILFDPDWSAAF 66 Query: 90 WPSIANTALLIGSVLCISVIGGTLLAVLFD-QPFRGRGIARLLVIGPFFVMPTVAALIWK 148 W ++ N + + G LLA LF + RG R L+ P + + IW+ Sbjct: 67 WNAMWNNVKFFCIHMALQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQ 126 Query: 149 NMIMHPVYGMLAFVMRHLGMAPIDWLAEY------PMLSVIIIVSWQWIPFAFLILLTAL 202 +I+ P++G+ ++ +G+A DW A + +L++ +I WQ++ +++ AL Sbjct: 127 -LILSPLWGVGEKLLGTVGLA--DWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAAL 183 Query: 203 QSLDGDQKEAAQLDGA 218 ++ + EAA +GA Sbjct: 184 LAVPEEVLEAAHAEGA 199 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 760,407 Number of extensions: 31872 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 10 Length of query: 231 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 149 Effective length of database: 1,231,600 Effective search space: 183508400 Effective search space used: 183508400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)