BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0109.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309779|ref|YP_003773871.1| fructokinase [Herbaspirillum se...   392   e-110
gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase [Herbasp...    60   3e-10

>gi|300309779|ref|YP_003773871.1| fructokinase [Herbaspirillum
           seropedicae SmR1]
          Length = 301

 Score =  392 bits (1006), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/308 (65%), Positives = 227/308 (73%), Gaps = 36/308 (11%)

Query: 1   MPHPIEFVVFGEALTDFIRQPGGEWRADHQRFDERFVRKSEIYNDFLFKYGGRHMVVGRI 60
           M     FVVFGEALTDFIRQP  +WRA                                 
Sbjct: 1   MTQSAAFVVFGEALTDFIRQPDEQWRA--------------------------------- 27

Query: 61  GEXYGGRHMVVGRIGGARLGVATGYAGSVSSDVFGEELRVLTQEAGLDMRYLQQVDKSPL 120
               GG    V R   ARLGV TGYAGSVS+DVFG EL  LTQ AGLDMR+ QQ  K+PL
Sbjct: 28  --IPGGACWNVAR-AAARLGVPTGYAGSVSTDVFGAELYALTQAAGLDMRFTQQYAKAPL 84

Query: 121 LAMVTSTTPPNYFFVGDDSADLHFDPRKLPAGWMDEARVLHFGCISLTREPLASRLLAIA 180
           LAMVTSTTPP+YFF+GDDSADLHFDP++LPAGW+D+A+VLHFGCISLTREPLASRLL IA
Sbjct: 85  LAMVTSTTPPDYFFIGDDSADLHFDPQRLPAGWLDDAQVLHFGCISLTREPLASRLLQIA 144

Query: 181 TEGAQRGKRVAFDPNWRKLMDQPGYHVLMRKLLALSHYVKVSDEDLEKLFPGDAQPLATL 240
            E A+R K++AFDPNWRKLMD P Y +L ++LL+LSHYVKVSDEDLE+LFPGD   LATL
Sbjct: 145 QEAARRNKKIAFDPNWRKLMDSPSYRLLFQQLLSLSHYVKVSDEDLERLFPGDTNALATL 204

Query: 241 KALAPQAEILFTRGGDGLSWIKGESVVDQPAYRVEVIDTVGCGDASMGGWIASILRQADA 300
           ++LAPQAEIL+T G  G+ WIKGE V+DQPAYRVEVIDTVGCGDASMGGWIAS LRQ DA
Sbjct: 205 QSLAPQAEILYTLGAKGMQWIKGEQVIDQPAYRVEVIDTVGCGDASMGGWIASQLRQPDA 264

Query: 301 PVLTHLQC 308
           P   HLQC
Sbjct: 265 PAQVHLQC 272


>gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 27/246 (10%)

Query: 74  IGGARLGVATGYAGSVSSDVFGEELRVLTQEAGL-------DMRYLQQVDKSPLLAMVTS 126
           IG ARLG+  G+A  V +D FG  +R    + G+       DM +   +    L A    
Sbjct: 44  IGLARLGLKVGWASRVGNDAFGRFIRQRVAQEGVEVSRVITDMEFRTAIQ---LKAKAVG 100

Query: 127 TTPPNYFFVGDDSADLHFDPRKLPAGWMDEARVLHFGCISLTREPLASRLLAIATEGAQ- 185
              P   +    SA  H       AG+   AR LH   I+     L++  +A A +    
Sbjct: 101 GADPAIEYYRKGSAASHLSVDDFDAGYFGAARHLHATGIA---PALSATTMAFAHQAMDF 157

Query: 186 ---RGKRVAFDPNWRKLMDQPGYHVLMRKLLALSHYVKVSDEDLE--KLFPG--DAQPLA 238
              +GK ++FDPN R ++  P   V+ ++L AL+         L   K+  G  DA+ +A
Sbjct: 158 MRGQGKTISFDPNLRPML-WPSQEVMAQQLNALAFKADWVLPGLSEGKILTGHDDAREIA 216

Query: 239 TLKALAPQAEILFTRGGDGLSWIKGES---VVDQPAYRVEVIDTVGCGDASMGGWIASIL 295
                     ++   G +G  W  G+    V   P    EV+DTVG GD    G I+ +L
Sbjct: 217 GFYLERGVKLVVIKLGAEGAYWRNGQGEGRVAGVPVK--EVVDTVGAGDGFAVGVISGML 274

Query: 296 RQADAP 301
                P
Sbjct: 275 EGLPVP 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,125,875
Number of extensions: 49921
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)