BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0104.p
         (438 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309773|ref|YP_003773865.1| major facilitator superfamily p...   461   e-131
gi|300309620|ref|YP_003773712.1| major facilitator superfamily p...   229   3e-61

>gi|300309773|ref|YP_003773865.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  461 bits (1187), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/398 (64%), Positives = 312/398 (78%)

Query: 34  ATAAEAAPAIPHSQTAVMIQILSTVLFTFLAYMTIGIPLAVLPGYVHLDLGYSSFIAGLS 93
           AT   AAP  P +   V  QI++T  FTFL Y+ IGIP+AVLPGY+HLDLGYSS +AGL 
Sbjct: 12  ATPVPAAPPRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLG 71

Query: 94  ISVQYLSTFITRAQAGRMVDTIGPKKTVMRGMLACVASGAFLVLAAWSAELPWLSLSMIL 153
           ISVQY +TF++RA AGRM+DT+G K+TVMRGML C ASGA L+ +A +  LP+LSL ++ 
Sbjct: 72  ISVQYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVLLF 131

Query: 154 VSRFCLGIGESLAGTGSIIWGIGRIGATHTARMISWNGIATYGALAIGAPLGVALLHVGG 213
            SR  LG+GESL GTG+I+WG+GR+G+ +TA+MISWNGIATY ALAIGAPLGV L    G
Sbjct: 132 ASRALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLG 191

Query: 214 FAAIGFLALALPLIGYVIARRRPAVPVVRGERLAFRLVLNRVLPYGIGLALGTVGFGAIA 273
           FA IG   + L  +GYV+AR  P  PVV+GE+L+F+LVL +V  YG+GLA GT+GFG+IA
Sbjct: 192 FAMIGLSGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIA 251

Query: 274 TFITLYYASHQWSNAAFSLTLFGGCFIGSRLLFANSINRFGGFKVAIASFIVEAFGLSIL 333
           TFITLYYA   WS AAF+LT F   F+G+RLLFAN+I RFGG++VA+ SF+ EA GL +L
Sbjct: 252 TFITLYYADLHWSGAAFALTAFSSAFVGARLLFANAITRFGGYRVAVVSFLTEAVGLLLL 311

Query: 334 WLAGSAEVAMLGAALAGFGFALVFPSLGVEAVGLVPAPNRGAALGAYSVFLDLALGITGP 393
           W   + E+A+LGA LAGFGFALVFPSLGVEAV LV   NRGAAL AYSVFLDLALGITGP
Sbjct: 312 WSTTTPELALLGAGLAGFGFALVFPSLGVEAVNLVSPANRGAALAAYSVFLDLALGITGP 371

Query: 394 LAGLIVGQFGYEEVFLFAAIGALCAVALTLSLYRRSQH 431
           LAG I GQ GY +VFLFAAI A+ AVAL+LSLYR +Q 
Sbjct: 372 LAGAIAGQLGYPQVFLFAAIAAIGAVALSLSLYRSAQQ 409


>gi|300309620|ref|YP_003773712.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  229 bits (585), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 153/389 (39%), Positives = 223/389 (57%), Gaps = 9/389 (2%)

Query: 27  SGSVPPTATAAEAAPAIPHSQTAVMIQILSTVLFTFLAYMTIGIPLAVLPGYVHLDLGYS 86
           S +  P      A+P +     AV  ++    L  F+A++TIG+ L VLP ++   LG +
Sbjct: 4   SSTDKPARVTPLASPGV-----AVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKDALGMN 58

Query: 87  SFIAGLSISVQYLSTFITRAQAGRMVDTIGPKKTVMRGMLACVASGAFLVLAAWSAEL-- 144
           + + G+ +  Q+ +  ++RA AG   D  G K+ VM G +    SG  LV  A  A L  
Sbjct: 59  ATVVGVVVGAQFAAALLSRAWAGNFADLRGAKRAVMAGFITAALSG--LVYLASLALLGR 116

Query: 145 PWLSLSMILVSRFCLGIGESLAGTGSIIWGIGRIGATHTARMISWNGIATYGALAIGAPL 204
           P  S++++L+ R  L +GESL  TG++ WGIG +G  H  ++++W GIA Y A   GAPL
Sbjct: 117 PDWSVAVLLLGRVVLALGESLMVTGAMSWGIGLVGPQHGGKVMAWLGIALYAAFGAGAPL 176

Query: 205 GVALLHVGGFAAIGFLALALPLIGYVIARRRPAVPVVRGERLAFRLVLNRVLPYGIGLAL 264
           GVA+  + GFA I   ++ L L   ++     A+      R  F  VL  V   G+GLA 
Sbjct: 177 GVAINQIYGFAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAF 236

Query: 265 GTVGFGAIATFITLYYASHQWSNAAFSLTLFGGCFIGSRLLFANSINRFGGFKVAIASFI 324
            +VGFG I  FI L +A+  W NAA + + FG  FI +RLLFA+  ++ GG +VA+   +
Sbjct: 237 SSVGFGVITAFIALLFAARAWGNAALAFSAFGAAFILARLLFAHLPDKLGGARVALVCVL 296

Query: 325 VEAFGLSILWLAGSAEVAMLGAALAGFGFALVFPSLGVEAVGLVPAPNRGAALGAYSVFL 384
           +EA G  ++W A +A  A LGAAL GFG++L FP  GVEA+   P   RG A+GAY  FL
Sbjct: 297 IEAAGQLLIWQADAAHWAYLGAALTGFGYSLAFPGFGVEAMRRAPPQTRGLAMGAYVAFL 356

Query: 385 DLALGITGPLAGLIVGQFGYEEVFLFAAI 413
           DL+LGIT PLAG++    G + ++L  A+
Sbjct: 357 DLSLGITSPLAGVLASHAGVQSIYLAGAV 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,254,598
Number of extensions: 50102
Number of successful extensions: 347
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,203,190
Effective search space: 421116500
Effective search space used: 421116500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)